PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_30912.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 201aa MW: 21923.8 Da PI: 9.1476

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_30912.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H evm.TU.contig_30912.1 46 FECKTCNRQFPSFQALGGHRASH 68 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.58E-9	44	68	No hit	No description
Pfam	PF13912	3.5E-13	45	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	46	68	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.827	46	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.58E-9	101	128	No hit	No description
Pfam	PF13912	9.6E-10	105	130	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.66	106	133	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.5	106	128	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MKRSNLQGGV GELDSLTMAN CLMLLSQGGN FYEGSTMAAA NPIRVFECKT CNRQFPSFQA 60 LGGHRASHKK PRLMPTTTEE GSGNTADKDS TASLSSSSSP AKPKTHECSI CGLEFAIGQA 120 LGGHMRRHRG GGSSRNETTI AGHHHHHQPL PAPRDFDNKT LVKRSNSRRV LWLDLNLTPM 180 ENDLELFKLQ KTSPMVDCFF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_30912.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021911632.1	1e-149	zinc finger protein ZAT12-like
TrEMBL	G8IEK9	2e-69	G8IEK9_POPTR; C2H2 family protein
STRING	evm.TU.contig_30912.1	1e-148	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	9e-25	C2H2 family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_30912.1