PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_30133.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 568aa    MW: 63468.1 Da    PI: 9.7988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_30133.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.49.7e-154089255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++GVr ++ +gr+v+eIr p   g+++r++lg+f ++++Aa+a++ a+  l+g
  evm.TU.contig_30133.1 40 PFRGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFRSPDMAARAYDSAAFFLKG 89
                           69****888.**********8...557***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1264097IPR001471AP2/ERF domain
SMARTSM003801.2E-3040103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-264198IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-174199IPR016177DNA-binding domain
PRINTSPR003675.0E-104152IPR001471AP2/ERF domain
CDDcd000184.52E-254199No hitNo description
PfamPF008475.5E-84189IPR001471AP2/ERF domain
PRINTSPR003675.0E-107999IPR001471AP2/ERF domain
PfamPF133343.4E-20187295IPR025298Domain of unknown function DUF4094
PfamPF017622.9E-45330526IPR002659Glycosyl transferase, family 31
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006486Biological Processprotein glycosylation
GO:0010584Biological Processpollen exine formation
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008378Molecular Functiongalactosyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSVTQEPTQP PQSSSTCTHL ESAPVINSRS NKRTRQTDTP FRGVRKRSWG RYVSEIRLPG  60
QKTRIWLGSF RSPDMAARAY DSAAFFLKGN SASLNFPNSI DSLPRPLSSS RRDIQSAAAQ  120
AALVSVGSDP KNEWREGREN TTSFKEDSEV DYFPPLSPLT FDSVNRRGIF ALLKKKIMMR  180
GKAVLLSGKA ILMACIGSFL AGSLFGSRNW STRSANYDLP RDNHHRLPII PYHVNRNMVQ  240
LPSDSRHDHG HNNPGLPQGV AGDVMGEVVK THRAIQSLEK TISMLEMELA VARTSSSNGG  300
DGIQNPPPTN HTLQKAFVVI GINTAFSSKK RRDSVRETWM PGGAKLKKLE REKGIVIRFV  360
IGHSATPGGI LDKAIDAEEV EHGDFLRLKH VEGYHELSTK TRLYFSTAVS IWDAEFYLKV  420
DDDVHLNLGT LVSRLARYRW KPRVYIGCMK SGAVLSQKGV KYHEPEYWKF GEEGNKYFRH  480
ATGQIYAISK DLAAYISINQ PILHRYANED VSLGSWFIGL EVQHVDERSM CCGTPPDCEW  540
KAQAGNVCVA SFDWSCSGIC KSVERIKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12411011576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBeta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_30133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911705.10.0probable beta-1,3-galactosyltransferase 8 isoform X1
SwissprotQ9C8090.0B3GT8_ARATH; Probable beta-1,3-galactosyltransferase 8
TrEMBLA0A061FJ430.0A0A061FJ43_THECC; Hexosyltransferase
STRINGevm.TU.contig_30133.10.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.18e-23related to AP2 10
Publications ? help Back to Top
  1. Qu Y, et al.
    Identification of a novel group of putative Arabidopsis thaliana beta-(1,3)-galactosyltransferases.
    Plant Mol. Biol., 2008. 68(1-2): p. 43-59
    [PMID:18548197]
  2. Li WL,Liu Y,Douglas CJ
    Role of Glycosyltransferases in Pollen Wall Primexine Formation and Exine Patterning.
    Plant Physiol., 2017. 173(1): p. 167-182
    [PMID:27495941]
  3. Suzuki T, et al.
    KNS4/UPEX1: A Type II Arabinogalactan β-(1,3)-Galactosyltransferase Required for Pollen Exine Development.
    Plant Physiol., 2017. 173(1): p. 183-205
    [PMID:27837085]