PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_29173.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 371aa    MW: 42058.4 Da    PI: 6.6921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_29173.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.11.3e-311242281100
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+k ltpsdv+k++rlv+pk++ae++     g + e++  l++ede g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F 
  evm.TU.contig_29173.1 124 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgGDSGEKGLLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVFFL 211
                            99****************************9555568889************************************************ PP

                            E-SSSEE..EEEEE-SS CS
                     B3  84 ldgrsefelvvkvfrks 100
                            ++++++++l+++++r+s
  evm.TU.contig_29173.1 212 RHRSETERLFIGWRRRS 228
                            98889999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-40118234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-31122231IPR015300DNA-binding pseudobarrel domain
CDDcd100175.25E-27123218No hitNo description
PfamPF023621.8E-28124228IPR003340B3 DNA binding domain
SMARTSM010194.4E-25124228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733124228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSINHYPTEL QDTLWCHQQQ NMEATQNNQS PNHHNPPFLP HQNTSWTTSH HNHRYQHHVQ  60
PNWLASSYNL HYPPQEESSS IFMMPTPQND DVEDLDDAPT THQDHQNYNY HHVRVEDAEK  120
EALFEKPLTP SDVGKLNRLV IPKQHAEKYF PLSGGDSGEK GLLLSFEDEL GKCWRFRYSY  180
WNSSQSYVLT KGWSRYVKEK QLDAGDVVFF LRHRSETERL FIGWRRRSSL PLPSAQDCGN  240
TPAYSSGGTG GWNRQGLAPY HSGHSGIQGI GPNTVPYRID SLRAGGVIQG QTPVVGNSKR  300
LRLFGVNLEC QLDESEPSTP DGSSVSSHGP AHLPLYAQPY SSPSYMGGVR KIRFDQVQLL  360
NHLDIHNEID *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4812123511125DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_29173.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891049.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ28e-67Y2608_ARATH; B3 domain-containing protein At2g36080
SwissprotQ9FNI32e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A438EK281e-95A0A438EK28_VITVI; B3 domain-containing protein
STRINGevm.TU.contig_29173.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-69B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]