PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_25049.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 79aa    MW: 8977.64 Da    PI: 10.4792
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_25049.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.58.7e-191150342
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           i n+s r+ tf kR++g++KK +ELS+LCd++++ ii+s+
  evm.TU.contig_25049.5 11 ITNNSVRKATFKKRKKGLMKKVSELSTLCDVKACTIIYSP 50
                           89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.759149IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-25160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-24177IPR002100Transcription factor, MADS-box
CDDcd002668.73E-20278No hitNo description
PRINTSPR004042.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MTRKKIKLSY ITNNSVRKAT FKKRKKGLMK KVSELSTLCD VKACTIIYSP YDSQPDVWPS  60
PLGAQHVLAD FKRMPEME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIKLSYITNNSVRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_25049.5
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376202.12e-41PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-25AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF693e-38U5GF69_POPTR; Uncharacterized protein
STRINGevm.TU.contig_25049.57e-52(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-31M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]