PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_24864.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8605.2 Da    PI: 9.1491
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_24864.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-0813381742
                           HHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF 17 rngilKKAeELSvLCdaevaviifss 42
                            +  +KK +ELS LC ++++ ii+s+
  evm.TU.contig_24864.2 13 EEEFMKKVSELSMLCKVKACEIIYSP 38
                           5668********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.71E-11369IPR002100Transcription factor, MADS-box
PfamPF003193.4E-7339IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MTKKKKSYFQ EKEEEFMKKV SELSMLCKVK ACEIIYSPYD WQPEVWSTPF LAQRLLADFK  60
MMPEKEQSKK M
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_24864.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911860.14e-23agamous-like MADS-box protein AGL80, partial
RefseqXP_021911963.13e-23agamous-like MADS-box protein AGL80
TrEMBLU5GF692e-21U5GF69_POPTR; Uncharacterized protein
STRINGevm.TU.contig_24864.21e-43(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.11e-17M-type_MADS family protein