PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	25.6	2.7e-08	22	73	4	53
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelm..kvkgLtlehvkSHLQkY 53 l+Wt+ e++ a+eq GG e A Pk++l+ m + ++Ltl+ vk L + estExt_fgenesh3_pg.C_70223 22 LKWTTRVEEAYEAALEQVGGLEAAKPKSVLDQMrgEFPSLTLQSVKWKLLAH 73 89*****************************444789****9777655 PP
2	G2-like	28.3	4e-09	92	144	4	54
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelm..kvkgLtlehvkSHLQkYR 54 +W+ L e + av++LGG + A Pk++le++ + +++tl+ vk H Qk R estExt_fgenesh3_pg.C_70223 92 TKWAGRLEEVYEAAVARLGGLQAARPKALLEALlpEFPSMTLQVVKGHVQKQR 144 68***************************8866899***********88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-7	22	78	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-7	92	149	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MGDSVGGLEE VPPASSGPGR TLKWTTRVEE AYEAALEQVG GLEAAKPKSV LDQMRGEFPS 60 LTLQSVKWKL LAHRRRVERH RVMEPAGITP PTKWAGRLEE VYEAAVARLG GLQAARPKAL 120 LEALLPEFPS MTLQVVKGHV QKQRRRVQRQ QQPEGSGSAD GGAQATPPHG SPSVAAAMAA 180 AASAGAAGGS ATTASSMQVD SFGVGAVSAV QQLIEEPSEG QLRLPQQQQQ QQQPHMPRPQ 240 RHRQQPQQQQ QQPGDEPQRQ QPSLLPEPQR HALPLAAPPW QPYLPPAAQR AAARASRAAL 300 LCRQMVVLLQ QNEERLARLL QALEQRQRRE AALSGLAGLG TSGGGGGSSL SSVVAELTPD 360 LQRVLEWLLP RGMAAAAASR CDSSGSGSGS GGGVGSGPAL PLRPRPLPAR ASRQQRNLAE 420 IAGSFTLLPQ HTVPPQGSRH DAATCAAPAC PVCAYERRLQ RSREQRDVAP LPPDARSPQQ 480 QQHHQGTGGT SSGIPRILPV AGPPTRVLAE LLQIPQALMQ PPPH*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MGDSVGGLEE VPPASSGPGR TLKWTTRVEE AYEAALEQVG GLEAAKPKSV LDQMRGEFPS  60
LTLQSVKWKL LAHRRRVERH RVMEPAGITP PTKWAGRLEE VYEAAVARLG GLQAARPKAL  120
LEALLPEFPS MTLQVVKGHV QKQRRRVQRQ QQPEGSGSAD GGAQATPPHG SPSVAAAMAA  180
AASAGAAGGS ATTASSMQVD SFGVGAVSAV QQLIEEPSEG QLRLPQQQQQ QQQPHMPRPQ  240
RHRQQPQQQQ QQPGDEPQRQ QPSLLPEPQR HALPLAAPPW QPYLPPAAQR AAARASRAAL  300
LCRQMVVLLQ QNEERLARLL QALEQRQRRE AALSGLAGLG TSGGGGGSSL SSVVAELTPD  360
LQRVLEWLLP RGMAAAAASR CDSSGSGSGS GGGVGSGPAL PLRPRPLPAR ASRQQRNLAE  420
IAGSFTLLPQ HTVPPQGSRH DAATCAAPAC PVCAYERRLQ RSREQRDVAP LPPDARSPQQ  480
QQHHQGTGGT SSGIPRILPV AGPPTRVLAE LLQIPQALMQ PPPH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005848990.1	0.0	expressed protein
TrEMBL	E1ZBN8	0.0	E1ZBN8_CHLVA; Expressed protein
STRING	XP_005848990.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17356316

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]