PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pm.C_160127 | ||||||||
Common Name | COCSUDRAFT_54465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C3H | ||||||||
Protein Properties | Length: 209aa MW: 21812.6 Da PI: 8.2906 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34 | 5.1e-11 | 35 | 59 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+++ G+C++G+rC+FaHg+ estExt_fgenesh1_pm.C_160127 35 KTKLCMRWKN-GHCRFGERCNFAHGE 59 8*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-15 | 32 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-9 | 33 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.643 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 33 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF51045 | 9.49E-11 | 166 | 204 | IPR001202 | WW domain |
SMART | SM00456 | 4.8E-9 | 173 | 205 | IPR001202 | WW domain |
CDD | cd00201 | 3.12E-10 | 175 | 203 | No hit | No description |
PROSITE profile | PS50020 | 14.599 | 175 | 205 | IPR001202 | WW domain |
Pfam | PF00397 | 1.3E-10 | 175 | 203 | IPR001202 | WW domain |
Gene3D | G3DSA:2.20.70.10 | 7.4E-11 | 177 | 204 | No hit | No description |
PROSITE pattern | PS01159 | 0 | 178 | 203 | IPR001202 | WW domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDGAFPSGTK GEGFDAGAEY AEQRKGFRGN AENAKTKLCM RWKNGHCRFG ERCNFAHGEE 60 ELRKLPARGN GFQGPGPYGG QSDFRGSFEG GGYPQRSSGP AGFNSYGAGY SGGYGAGFGN 120 PGQGGGLGGP SVGGYGGHPR EIVSASNPGQ RPGGVNGRGD AWGGQVPAYA PVIGPEGWTE 180 YRAPDGQAYY YNHNTKENTW DKPPCWGQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005644870.1 | 1e-146 | hypothetical protein COCSUDRAFT_54465 | ||||
TrEMBL | I0YPK7 | 1e-145 | I0YPK7_COCSC; Uncharacterized protein | ||||
STRING | XP_005644870.1 | 1e-145 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5690 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17038302 |
Publications ? help Back to Top | |||
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