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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_Chr_13.00010057 | ||||||||
Common Name | OT_ostta13g00740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 22040.2 Da PI: 4.7002 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.2 | 1.2e-10 | 9 | 59 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 WT eE+ l d+v+++G g W++I ++R+ ++k++w+++ estExt_fgenesh1_pg.C_Chr_13.00010057 9 REWTVEEERALRDGVQKYGAGKWRAIQLDPTfglalNHRSNVDLKDKWRNL 59 68*************************987777****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.21 | 1 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.11E-16 | 6 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-8 | 7 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-15 | 8 | 59 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.73E-20 | 9 | 59 | No hit | No description |
Pfam | PF13921 | 6.0E-8 | 11 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MLKIPAVKRE WTVEEERALR DGVQKYGAGK WRAIQLDPTF GLALNHRSNV DLKDKWRNLH 60 ANGGSAEAEP TATEVKLGAM TREVSSSGRE QSGEKAAKRR KEDESEDASG GRALTGAHEA 120 QVNELMAETQ RAKREAETAL AAATEAEREA ERAEREAWEA EKLASELVTE AHRQKVGLPV 180 EGAEDVADVA AELLDEDERG GG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022840173.1 | 1e-139 | SANT/Myb domain | ||||
TrEMBL | A0A096P7B5 | 1e-138 | A0A096P7B5_OSTTA; SANT/Myb domain | ||||
STRING | A0A096P7B5 | 1e-139 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3956 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 2e-17 | MYB_related family protein |
Publications ? help Back to Top | |||
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