PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_04.00010344
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 1293aa    MW: 138180 Da    PI: 8.7112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_04.00010344genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05798816220
                                           EETTTTEEESSHHHHHHHH CS
                               zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                                           +C+ Cg++F+  + L++Hi
  estExt_fgenesh1_pg.C_Chr_04.00010344 798 RCNVCGRTFKAYDALEQHI 816
                                           7*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014797820IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221797825IPR007087Zinc finger, C2H2
PROSITE patternPS000280799820IPR007087Zinc finger, C2H2
SuperFamilySSF576678.7E-810511086No hitNo description
SMARTSM004516.1E-410541088IPR003604Zinc finger, U1-type
SMARTSM003551310571081IPR015880Zinc finger, C2H2-like
PfamPF128747.2E-610581081No hitNo description
PROSITE patternPS00028010591081IPR007087Zinc finger, C2H2
SuperFamilySSF553151.16E-1711191253IPR02906450S ribosomal protein L30e-like
Gene3DG3DSA:3.30.1330.307.2E-1411511251IPR02906450S ribosomal protein L30e-like
PfamPF012481.3E-1211521241IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005840Cellular Componentribosome
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1293 aa     Download sequence    Send to blast
MDGVGTTHWM ARAAPVSAAP TPAQVKAGND PGGGIVVARG SFVNAVANVE AVVIVGGLTE  60
DTLYYVSTVG ESGGTSPTLQ STTQTLSVRT ADESAPTIGS FTYAANGNEI ALTVTLSDED  120
GTVYYVLQHV GVPAPSVQQV LDGKNSSALP AISSGNMQLI RNVPRTIDTT GAVGLVLGAQ  180
YTAHYVAVDT LGNKPSAVSS TNVNTSPMPP APNPPPSPPA PSPPPPPPLV ASPPPPSPPP  240
SPPPTPETDA PVFTTGFPKV DTATNSSFKL HAAMNERGVL YFAVFEGTLA QITAPTGAAL  300
KAQTALVSDP ALRHIGVMYL SASTTASRTF NSLKPGGKYV VFAVGEDDLA NMMSTVTSMD  360
IELLDDVAPT STWSATLSGT QLTINATSTE KGMVYYVCST DLMANLSPND VKNAADIRPR  420
VFRHGSFELK NENVQEYVTL NVGYGRDFIV HILVEDKSGN HVNVERSRRI VTLTAPPPPP  480
PAPSPPPALR VERDEDLMIS MFVLTYSALA LVILYVLVRA CSQYGMASYR ANMSIRRRYM  540
AKKMTRASMT AGVARDLVDA LNAREDVARA VASVVCSTGA RALPSDVVVS LGFRSHDFVN  600
DANWDDSLTT EERRTVLRYV NACPEIFHAF ASTAHVGTGG ETRCSRFARG VAADVAERAA  660
AFAKAHGART MEDPDDLRGK ATRDGGRGDG RGGAKDAGDR NGGKRAAPRA APRAATPATP  720
APWLAASATR SSDVAEAKPT TSLKDIMALE SRQSSRPIPS TRADTRTRAA APKLPVITAE  780
LLRRESRRSV MDKFGKVRCN VCGRTFKAYD ALEQHIGASH YGLNNPEAKA LETALIAAGL  840
APAGGDGKNR VSLKLGDLVS STTKTSNSMV NSLAAYFKTE KQTSQRAEKK EGNIHGGQFV  900
RSTNMASTSG MVLRRGVERR DGKKKKRSTL KKIILADRAL RREAETDKNA TVDEVEVEVE  960
VRVGWVYVVL EFVENEDVRV RLMCMEDDPN DKDGSSTDEG EDEDAERDDA GDGVSTKEKL  1020
EVIEARAPAG AWGVRSLADV LKGAEPKAPP KVKQEARTCE VCNVQCFGER AWEAHIAGKV  1080
HAKKLSFRDD PEAAKKAALS AKSSTTYVGT EGMENARHAN QIITEELNEA TTALLSTLKR  1140
FQDRLYHTDK IKAKQRRRLL YGLREVAKSV DAKTSKVVII APNIEKIESE GGLDDRIQAI  1200
IADAREKEVP VVFALTKRRI GKALNIQAVS IVSVLDYNGA DEEYKKAVKL AAEGRALYIK  1260
HKQANTVVEQ PMAKQPAQLS LAAVEFIPIG AR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003079049.10.0Ribosomal protein L7Ae/L30e/S12e/Gadd45
TrEMBLQ01A690.0Q01A69_OSTTA; Ribosomal protein L7Ae/L30e/S12e/Gadd45
STRINGQ01A690.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP76555