PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_Chr_04.00010339 | ||||||||
Common Name | OT_ostta04g05010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | ERF | ||||||||
Protein Properties | Length: 416aa MW: 42565.2 Da PI: 8.7957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.9 | 9.4e-22 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrdp + r +r +lg+f+taeeAa+a++aa++ ++g estExt_fgenesh1_pg.C_Chr_04.00010339 41 SQYRGVRQRP-WGSWAAEIRDP---N-RgARLWLGTFDTAEEAARAYDAAARHIRG 91 78********.**********8...3.35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.5E-15 | 41 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 41 | 99 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.72E-19 | 41 | 99 | No hit | No description |
PROSITE profile | PS51032 | 23.933 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-33 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-38 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAGRGGRKSS PDVDSEVDLD DVDVGDEEGK GDKQSKKATT SQYRGVRQRP WGSWAAEIRD 60 PNRGARLWLG TFDTAEEAAR AYDAAARHIR GPNAKTNFQL APGEEPPPFV LPEPPSGGRG 120 MGGGAGGGGR GRGSDMGLPS TGYGGAGPSR QPNMMKKQKP VKGGVSTIYG FGTPTGEKSG 180 VPKRGSIGFG SGIDLSALAN ANLALANQNL ASAGSARKES ESGFMKLFAN GSLGDTPSST 240 GGSPLIMPES IEFRDGIFGM SGEIPVISTK RDRGPSSAFF GTSFGVAGSF GSMFPPDMGL 300 SSTPDAGDGS NFSGFPMSPN TGIDGDFNVG SLGTIGDLGD ALPAVGSFEL GSPVDLDSMM 360 NSMSRNSGGK AQPMASILGK PKKQEHDSPL GRASTRSSRD TRSKSAQLDA LSALK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 38 | 98 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 123 | GGRGMGGG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022838868.1 | 0.0 | DNA-binding domain | ||||
TrEMBL | A0A090M4Z9 | 0.0 | A0A090M4Z9_OSTTA; DNA-binding domain | ||||
TrEMBL | A0A454XSF6 | 0.0 | A0A454XSF6_OSTTA; Uncharacterized protein | ||||
STRING | A0A090M4Z9 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 2e-18 | cytokinin response factor 1 |
Publications ? help Back to Top | |||
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