PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_20478 | ||||||||
Common Name | COCSUDRAFT_46285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C2H2 | ||||||||
Protein Properties | Length: 859aa MW: 91813.8 Da PI: 7.7188 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 291 | 313 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C C F ++++L +H r H estExt_fgenesh1_pg.C_20478 291 ECVGCLIAFATPDELAQHRRErH 313 59******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 2.0E-5 | 58 | 112 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 2.32E-5 | 61 | 114 | No hit | No description |
PROSITE profile | PS50089 | 9.48 | 66 | 107 | IPR001841 | Zinc finger, RING-type |
SMART | SM00355 | 7.3 | 169 | 196 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 2.7 | 232 | 255 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 234 | 255 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.7 | 256 | 284 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.452 | 290 | 318 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 11 | 290 | 313 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 292 | 313 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00393 | 0.0097 | 537 | 616 | IPR001374 | R3H domain |
SuperFamily | SSF82708 | 1.92E-12 | 542 | 631 | IPR001374 | R3H domain |
PROSITE profile | PS51061 | 12.899 | 554 | 617 | IPR001374 | R3H domain |
Pfam | PF01424 | 8.1E-12 | 556 | 615 | IPR001374 | R3H domain |
CDD | cd02325 | 6.84E-12 | 557 | 615 | No hit | No description |
Gene3D | G3DSA:3.30.1370.50 | 2.1E-10 | 557 | 620 | IPR001374 | R3H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence Send to blast |
MGHYQNEHIY SENMQQTGPG RPQRPPLDNR RLRGARPCIR PQEGEVKSGG KCESSGAQQE 60 EDVPACVICT GPLSIVAVGS CNHKDICARC SLLMRLNYDD IACPFCKTEL SQVILTRWKP 120 EGVPDFSELK GRSGTMWRKP AWARGVLVDN QSSSGGSPLS STVQGITAVA CPVCDEVGAR 180 PFRSVNLLQA HVKVEHGRSL CSICLSAKRR FPLELEAYSA DDLAAHMAAE HPRCDFCNLH 240 MYSGDELYEH MREQHFTCDI CQRAGSFLHF TSSDALIGHL RSDHHLCEEA ECVGCLIAFA 300 TPDELAQHRR ERHSRAMPRF NRARARIMPL GLDAFPSRPL PTSPDRDRVQ EQSVGRSQRP 360 RSGGRGSSGS AARAGGRGRE SAPQPRPAEE PSTSGGMVMI DDDLGMTGDA FPAMGPAASG 420 SRQGSEARRH AQEEQGSEEF PSLQAAAQSA SQANGHAPGG SAQTRPPALP SLQKVTVKCA 480 CGRRVSHIAL PVGTAPKPIR CDAECERVQR SSRLADAFGI GDPGHHVPWV DRQRQAMQDA 540 HYSPELLLYA WHNRAAVEDL ERQLADFVAD GAKKRASLAA APKQARHIAH LLAEQYGLAT 600 QSFGAEPNRC VQLFKGAHAA VPRQALSRAA AGMPLEDLER AVRAEKGFPV HFTDVAPAAD 660 LHRILQRWEG QFVLSGPHAD GSAAARFSRP EGAKEVLDAL GGGVRGQYRI NRAASTPAAS 720 APAAVPQAHA GSTCAASASR PTAGHQSSHT GISSSGHCSS HQRPQPPRPS GTFVVSAKID 780 PLAIRASDMA FEESPASAKP AKTKPETRLP AGVLPGSILK DGTSKESANG AATVGQDAEA 840 GSHLVAENWE DAADDGQE* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005651469.1 | 0.0 | hypothetical protein COCSUDRAFT_46285 | ||||
TrEMBL | I0Z8F6 | 0.0 | I0Z8F6_COCSC; Uncharacterized protein | ||||
STRING | XP_005651469.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4556 | 3 | 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 17044934 |
Publications ? help Back to Top | |||
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