PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_190079
Common NameCOCSUDRAFT_48920
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 834aa    MW: 88485.8 Da    PI: 7.2162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_190079genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-086385426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                                 + C++++++  C++Gd+C+FaHg
  estExt_fgenesh1_pg.C_190079 63 AACPDYRKNASCRRGDKCPFAHG 85
                                 68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-55988IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3945987IPR000571Zinc finger, CCCH-type
SMARTSM003560.00185986IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-66385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-66586IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MDEVKSNSLD DSEDHQSNTF RIFSYKVKRC SRSRPHDWTQ CPFSHSGEKA KRRDPRRFAY  60
TGAACPDYRK NASCRRGDKC PFAHGVFESW LHPSRYRTQC CTDGVACKRR VCFFAHQESE  120
LRKPEDDPAL LAAQLQAEAL ASTETYQQIL ASASLDSVPE ALPASNANPQ LNLAILQSLL  180
QNNGAAAQRL PINWAVDGES QERGRMYQLQ ALLAALQLRA PAPLPPQPAH SDALSNLDRI  240
ELGRLLAANQ ALVQQQAERE MLQRSSFEAV RRNSMSSDAG MGSDLGRQDS YLSHSGVGLP  300
NNGDGGYGDG RGNARNNFSP GVRRMSMDNA RSQINGSAGL DPRILAALAA AQRVNAPGGQ  360
PQGRNTAAYR RSVDMGMLAH AAAMGGAGRH GGNSAGFPKQ FGEQTSIPEG SPGIESSAQP  420
QQEATALANA FNQGPGVIDG FMAGARQPPG MEQLIGLAPA DQAALSASVL QSQDSLGNFQ  480
RAPSGYGSAQ INGQSQEVRR YLEQLGGQHS GQLTRQASDM STQGSGHFAL SGLGSFGHFI  540
SEGSGPLSSL GQASSGLGSF GQPLPQASGH IGPMQNHIGQ PRYSPARHSF SSADSLGRLS  600
DVQQQQQQAH MEDAINNGGW GGAPMTEGGD PQPRGGYQGN NAGGPPAERG LAASLLHPEE  660
GARAGEEQYV GSGSSTPSRG PPTPGVAPQH GMMSPREQPP SMHSSLYASS PASHTTTYET  720
SPMSMAMGLT GQPPIPEEGP GWPHTLQQQQ QAASAGACHA RRMPTLLEQL QLYERQRHSS  780
MPHFHAHASL AMARNTSFES LSAELPRSIS DMNLADHNLG SARMPTSIPA SST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005643898.10.0hypothetical protein COCSUDRAFT_48920
TrEMBLI0YLT50.0I0YLT5_COCSC; Uncharacterized protein
STRINGXP_005643898.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-49C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]