PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_100270
Common NameCOCSUDRAFT_47901
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bHLH
Protein Properties Length: 296aa    MW: 30811.5 Da    PI: 9.9361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_100270genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14114160455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h ++E+rRR riN+++++Lr+++P+a     ++ + a+ Le+++ YI+ Lq
  estExt_fgenesh1_pg.C_100270 114 RHQAAEQRRRTRINERLDRLRQVVPHA-----ERANTASFLEEVITYIQGLQ 160
                                  599***********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.973110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-11113164No hitNo description
SuperFamilySSF474592.49E-14113175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-12114160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-9116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEGAKPLRPT PQIPDLQQVM DAARVSSGLP AQQSALQNSL ASLANLRSAF TPMVPTQGPL  60
YPEIALFSQF NQLLPGMAEL AQHQQMLSRN AEPAASRGRT KSNDSKSSSA YASRHQAAEQ  120
RRRTRINERL DRLRQVVPHA ERANTASFLE EVITYIQGLQ KRIAELEQAA GGGQVIAQPT  180
IAQPATTSAP LMAQAGFTAV PRAAQSAEVP APAANHGHGA GAQGPLDARD KFSFSCTAAQ  240
APQEAQPSAQ PHTQPGTPPA VSGGHASEAG GASPASSEGC GMPLKKRRVV EGGSG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005647020.10.0hypothetical protein COCSUDRAFT_47901
TrEMBLI0YVQ70.0I0YVQ7_COCSC; Uncharacterized protein
STRINGXP_005647020.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP566588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-12BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]