PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genewise1Plus.C_10250
Common NameCHLNCDRAFT_33512
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB
Protein Properties Length: 411aa    MW: 46249.8 Da    PI: 10.0259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genewise1Plus.C_10250genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13853248
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  g W   Ede+l+ av ++G ++W++I++ +  ++++kqck rw+ +l
  estExt_Genewise1Plus.C_10250  8 GVWKNTEDEILKAAVMKYGLNQWARISSLLV-RKSAKQCKARWYEWL 53
                                  78*****************************.************986 PP
2Myb_DNA-binding353.4e-1160103248
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  estExt_Genewise1Plus.C_10250  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLDRYEKLL 103
                                   68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.123153IPR017930Myb domain
SMARTSM007172.1E-14655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-18960IPR009057Homeodomain-like
CDDcd001674.32E-121053No hitNo description
PfamPF139214.6E-131070No hitNo description
SuperFamilySSF466895.75E-2133110IPR009057Homeodomain-like
PROSITE profilePS5129420.26654107IPR017930Myb domain
CDDcd116595.80E-3155106No hitNo description
SMARTSM007178.7E-1358105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-1461104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MRILIKGGVW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWY EWLDPAIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLDRYE KLLDMAAGKE KYEGMDDPRR  120
LRPGEIDPNP ESKPARPDPV DMDEDEKEML SEARARMANT RGKKAKRKAR EKQLEEARRL  180
ASMQKKRELK AAGIEMRERT RRSRGIDYGK EVPFEVKPTA GFYDTQDEVQ ATKEMREEFR  240
PVTIDELEGK KRRDIEAALV KQDAARHKIA ERQNAPGMVK RALEANEAAQ QSRRGKMMLP  300
APQISDAELE QLARAGEHAV AMDTDLAEGG SAATRQLLGD YATPARFATP MRTPARTPAA  360
GGGNRIMNEA QNLRLLQTGQ TPLLGGDNPE LHPSDFAGVT PRATPAATPN P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-14924103406Cell division cycle 5-like protein
5xjc_L1e-14924103406Cell division cycle 5-like protein
5yzg_L1e-14924103406Cell division cycle 5-like protein
5z56_L1e-14924103406Cell division cycle 5-like protein
5z57_L1e-14924103406Cell division cycle 5-like protein
5z58_L1e-14924103406Cell division cycle 5-like protein
6ff4_L1e-14924103406Cell division cycle 5-like protein
6ff7_L1e-14924103406Cell division cycle 5-like protein
6icz_L1e-14924103406Cell division cycle 5-like protein
6id0_L1e-14924103406Cell division cycle 5-like protein
6id1_L1e-14924103406Cell division cycle 5-like protein
6qdv_O1e-14924103406Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851759.10.0hypothetical protein CHLNCDRAFT_33512, partial
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLE1Z2G20.0E1Z2G2_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005851759.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-173cell division cycle 5
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]