PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_Genewise1Plus.C_100148

Common Name

COCSUDRAFT_29579

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB_related

Protein Properties

Length: 267aa MW: 29908.7 Da PI: 9.8818

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_Genewise1Plus.C_100148	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.5e-09	197	241	2	46
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 g WT+eE+el+++ + +G g W + a++++ R ++qc ++++ estExt_Genewise1Plus.C_100148 197 GDWTEEEHELFLETARAHGVGdKWGLFASHIP-ARVGYQCSAYYRD 241 68****************************.******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-8	191	243	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.606	191	243	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.95E-9	196	245	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-7	197	241	IPR001005	SANT/Myb domain
CDD	cd00167	3.42E-5	199	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MMTGRSRVPH EPPTAPLNDY ERQREERIKR NNAILEQLGV HTAAQAVAAS HGRRLPQRHK 60 RKVAAKGAVR KCTRLRRDTQ PAPQTESLKA LDSEHNELMI LREYFKWKGE VVTGFVVDGH 120 YHGWVSPAVC KKYGIVESEE EAFASAGGSK AGAKGAKSGK MHGWSNARAF SATQLRTNPN 180 AYFYRHVEPD EEQQAQGDWT EEEHELFLET ARAHGVGDKW GLFASHIPAR VGYQCSAYYR 240 DTIIPRGLII DQRFRMTQAG KAVFVG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005646821.1	0.0	hypothetical protein COCSUDRAFT_29579
TrEMBL	I0YV58	0.0	I0YV58_COCSC; Uncharacterized protein
STRING	XP_005646821.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4636	7	7

Link Out ? help Back to Top
Entrez Gene	17040263

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]