PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_Genemark1.C_70364 | ||||||||
Common Name | COCSUDRAFT_66058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C2H2 | ||||||||
Protein Properties | Length: 1115aa MW: 116478 Da PI: 6.1002 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 747 | 768 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C Cg + ++ +L+ H+r estExt_Genemark1.C_70364 747 HECVVCGITTTSAAHLEAHMRG 768 78******************96 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 1080 | 1104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y C+ Cg++ ++ +++k+Hirt H estExt_Genemark1.C_70364 1080 YNCEVCGTTATDLETYKQHIRTkpH 1104 89*******************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 4 | 202 | 236 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 6.8 | 205 | 229 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 4.3 | 235 | 259 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.9E-6 | 237 | 259 | No hit | No description |
SMART | SM00451 | 0.51 | 237 | 266 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 8.46E-7 | 237 | 264 | No hit | No description |
SMART | SM00451 | 0.15 | 275 | 309 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 7.06E-8 | 277 | 309 | No hit | No description |
SMART | SM00355 | 0.081 | 278 | 302 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 4.5E-6 | 280 | 302 | No hit | No description |
SuperFamily | SSF57667 | 3.33E-7 | 320 | 356 | No hit | No description |
SMART | SM00451 | 0.05 | 323 | 357 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 2.7 | 326 | 350 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.3E-5 | 327 | 350 | No hit | No description |
SMART | SM00451 | 5.6E-4 | 546 | 580 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 4.62E-7 | 547 | 579 | No hit | No description |
SMART | SM00355 | 0.072 | 549 | 573 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 9.0E-5 | 550 | 573 | No hit | No description |
SuperFamily | SSF57667 | 4.77E-9 | 735 | 777 | No hit | No description |
SMART | SM00451 | 0.0024 | 744 | 778 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.023 | 747 | 771 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 1.9E-6 | 748 | 771 | No hit | No description |
SMART | SM00451 | 0.028 | 785 | 819 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 2.65E-7 | 785 | 816 | No hit | No description |
SMART | SM00355 | 1.8 | 788 | 812 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.4E-6 | 789 | 812 | No hit | No description |
SuperFamily | SSF57667 | 4.21E-5 | 1075 | 1110 | No hit | No description |
SMART | SM00451 | 0.14 | 1077 | 1111 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 0.0053 | 1080 | 1104 | No hit | No description |
SMART | SM00355 | 8.1 | 1080 | 1104 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence Send to blast |
MLAEAQEELP TEPLTSTGLR HHTTPLDQKE ALLDGKAALQ ITASADSRTQ QEFGTLPRAP 60 EHKEHAAGSQ APAPSTCSPP PDMHQALRAE GSAAVEGAPQ RASTAAEGEV RQQGSDTTGV 120 VTRVWRRGSQ DSEEGGYSSS PSSTASTLML KPLTPAQSGE HRLHGIKDAS DADAAAAKAA 180 AAQPYTAAVG ALDADGESSD GATVLRCRVC QTSAESEEEW REHCDGAMHR ARSQGSCEVC 240 DISATSPDLL VQHLQGRKHL RRLAEEADAA GARQAAEYPC DVCKVVTSSE EQLAVHMDGK 300 RHRKHIAMAE VTSSLTEDTG ADGEELHCEL CDVTAPSSTH KQIHLRGQKH QRREKQEQHL 360 TEAEQLCNST LDSVLDEPGP DTCAGHALQP AQTQSPSMYS TEPQCEQPAA EADPSAGAEA 420 AASGGAEAEA EGDCGILVSR GRAAGASGDE EVEFQGCGVP SAFADTAGFG GNAAGDEDDD 480 GSGGDGPGDR LGALPRRTLT LRPSGMRVRF SQSFDDDALG SDGEDSMRRL SSKPPLAPSG 540 GSVSLAAQHF CPVCGIIATS QANLEDHVRG RRHARRLQYI GNMPESERTP FMQRVASGTP 600 LLLIRAMLCD WHLLRRKDST SSTGSNGDAM TLLRIGSITL PSSMDLRQYL EQMQEVGDGD 660 DDAGPAATAA AAAPPGTASA PTAAAAHGDA GAILQAPGAM TDGAVDARTE ALRPECSDTS 720 DSEDFAAAEA AHGDGSGDIS NGPKERHECV VCGITTTSAA HLEAHMRGRK HKRRVEVSGA 780 RVQRPSSHYC KICDITTTSA QHMAMHVAGK AHLRRLTTGH LPAAAAQAVA ASAAAEAAVL 840 GDSAAGSLQV RAASSTSSRQ PSPAPRSAAE AAAAAAAAAA ASTVAHNSEL MTRLDRGSSL 900 RSADGGQAAK HRQLPQLHMQ QQQQQQWALH QQHMPAMQAG AVLHPSSPYG VQYVGYYPQQ 960 QAFYQAHVPG HQRTMQGYMP PAGWAQWGPH SGGFPGREAA FSAAAAAPGA AFAQHPVMYA 1020 AAQLSPRYAY AAMPPQPQAG GYVAAQQQPG HYVNGGGVGY MGAAGAAPFA QPGLQQGADY 1080 NCEVCGTTAT DLETYKQHIR TKPHLRRVNN NHRQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005648247.1 | 0.0 | hypothetical protein COCSUDRAFT_66058 | ||||
TrEMBL | I0YZ84 | 0.0 | I0YZ84_COCSC; Uncharacterized protein | ||||
STRING | XP_005648247.1 | 0.0 | (Coccomyxa subellipsoidea) |
Link Out ? help Back to Top | |
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Entrez Gene | 17041695 |
Publications ? help Back to Top | |||
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