PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_60296
Common NameCOCSUDRAFT_65761
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 690aa    MW: 76808.1 Da    PI: 8.9932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_60296genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-10631678247
                               SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                               g+W++e ++ lv+a k++G++   +W+ +++ ++ g+   +c  r+  +
  estExt_Genemark1.C_60296 631 GAWSEEQELALVQALKKFGKDdkeRWENVSQDVP-GKNKAECMRRFKEL 678
                               89********************************.**********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.3E-22101189IPR001623DnaJ domain
SuperFamilySSF465652.75E-21103180IPR001623DnaJ domain
SMARTSM002713.1E-20108176IPR001623DnaJ domain
PROSITE profilePS5007619.216109184IPR001623DnaJ domain
PfamPF002269.2E-19109181IPR001623DnaJ domain
CDDcd062571.42E-15109173IPR001623DnaJ domain
PRINTSPR006251.7E-8114132IPR001623DnaJ domain
PRINTSPR006251.7E-8132147IPR001623DnaJ domain
PRINTSPR006251.7E-8156176IPR001623DnaJ domain
PROSITE patternPS006360161180IPR018253DnaJ domain, conserved site
PROSITE profilePS512935.626463518IPR017884SANT domain
SMARTSM007177.0E-4464516IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-6466512IPR009057Homeodomain-like
CDDcd001670.00494467506No hitNo description
Gene3DG3DSA:1.10.10.607.6E-8625678IPR009057Homeodomain-like
SuperFamilySSF466893.36E-10626678IPR009057Homeodomain-like
PROSITE profilePS5129311.412628683IPR017884SANT domain
SMARTSM007171.3E-10629681IPR001005SANT/Myb domain
PfamPF002495.9E-9631678IPR001005SANT/Myb domain
CDDcd001673.80E-7632678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MTRKMAQQVF LLAIEYNVDG VPPGGKAVLG ALAAPVKHKN KDAAGHRFHE YALRQSGFFA  60
NEEDVAVQQE DSTVKPSPSQ GSFINDDQPP PGVSWKGKKK KKKKSEKEDL YALLGLQNER  120
WTATDAQIKL AYRKSALEHH PDKAGAASAD EATKQAIEEK FKAIQEAYET LSDPARRREF  180
DSTDDFDDTL PMDCAPEDFI KVFGPAFRRN SRWSVATPVP EVGEDETAWE DVDKFYDFWF  240
SFKSWREFPH PDEEDVEQAE CREEKRWLER MNSKLREAGK KEEKRRLKEF VENAYRCDPR  300
VIAHKEAQRA ERDRKKREKE AERQRKAEAE EKARAEEAAR VAAETAAAAE AAAEARKVRQ  360
IEKKATQKER SRLRSLCADM GTIVDEMAEL LCSNLQKDDL AAINASLSAE GATAATKEAL  420
LKERVGEVER ALYGEQRAKE EAAKRAAAEE RAAKRAAERQ KVQKAKEWSD EEVRLLEKAL  480
DKFPQGTVKR WEAVAGYVRT RGVDEVLDMV KHGLKAGRFA PKQDNFAVAK KRQGNTTIAS  540
DATQRVEAFT DVDVNLSGKA AAVLGGPAEA AALANGHAAP QANGNGTPRS ASKRAPAPMP  600
AAAKEALTEN GGGRSRARAA NGKASPAKKE GAWSEEQELA LVQALKKFGK DDKERWENVS  660
QDVPGKNKAE CMRRFKELRE SFRSKKDTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-1519830120123Zuotin
5dje_B9e-1519830120123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103KKKKKKK
2279286KKEEKRRL
3313318RKKREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005648679.10.0DnaJ-domain-containing protein
TrEMBLI0Z0G60.0I0Z0G6_COCSC; DnaJ-domain-containing protein
STRINGXP_005648679.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.15e-86DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]