PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_Genemark1.C_270025 | ||||||||
Common Name | COCSUDRAFT_68416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C2H2 | ||||||||
Protein Properties | Length: 301aa MW: 31760.3 Da PI: 8.5091 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.6e-05 | 16 | 37 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +C++ Fs+ s+L +H++ H estExt_Genemark1.C_270025 16 CYYCDRIFSDESTLIQHQKAkH 37 99****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 9.696 | 9 | 68 | IPR003656 | Zinc finger, BED-type |
SMART | SM00355 | 15 | 14 | 37 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 16 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.787 | 16 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.85 | 38 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 38 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 40 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MVRKKKKREA EQVPWCYYCD RIFSDESTLI QHQKAKHFKC TTCHRKLTSA SGLRVHCHQV 60 HRFTLDKVPA AIPGKDSIDL EVFGMSGVPE GASPGILTPE EDEPASKAAK VDAPGPTAPL 120 QPPQPHHPPF NGGLPIMPPR PLLPPPMRPP LMATPGFPFG IPPSAGHPGP YPGVAPPWPP 180 PPFLHGLPPQ PTGPLQQVPA FPIGSAHAAS SPAPLFPIAT GAETPASQGP VNLDVSASAR 240 SVPGSQPPPG LTPVDQHQSP AAPLISQPSS IDGVSTHDIS AEELRARHPR YTARVSVPQT 300 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 7 | RKKKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005642638.1 | 0.0 | hypothetical protein COCSUDRAFT_68416 | ||||
TrEMBL | I0YI75 | 0.0 | I0YI75_COCSC; Uncharacterized protein | ||||
STRING | XP_005642638.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4135 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 6e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17036050 |
Publications ? help Back to Top | |||
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