PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_100079
Common NameCOCSUDRAFT_66493
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family ERF
Protein Properties Length: 414aa    MW: 44113.1 Da    PI: 4.5409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_100079genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.31.4e-21171220154
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                                ++y+GVr+++ +g+W+AeIrdp+e   +kr +lg+f+tae+Aa+a++aa+++++
  estExt_Genemark1.C_100079 171 PKYRGVRQRP-WGKWAAEIRDPRE---SKRKWLGTFDTAEDAARAYDAAAREIR 220
                                79********.**********965...5***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.21E-17171229No hitNo description
PfamPF008471.1E-14171220IPR001471AP2/ERF domain
PROSITE profilePS5103224.263172229IPR001471AP2/ERF domain
SMARTSM003802.2E-32172235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30172229IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-22172230IPR016177DNA-binding domain
PRINTSPR003675.2E-11173184IPR001471AP2/ERF domain
PRINTSPR003675.2E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGEEGPGKLV SPFSSAQADI SNTRQEQDAC CSQPMYDSPA AADQKSLLVK PVSASALTKA  60
LSELSAPPSV TSEDVKPELC CSQPEAGQLV PASDSTALIA PQTPQPASLP AGSSSLDTHE  120
SDADEACCQD DGDSPAASQE AGEPADPAST APHPSGEERP GKSKGFDPNA PKYRGVRQRP  180
WGKWAAEIRD PRESKRKWLG TFDTAEDAAR AYDAAAREIR ADDAICNFPL DGAAPIPVPN  240
QNSRRKKKPD SDGDGENKAK PKSERKAKKD KEKADSDCKG KRSRETTAAF SLPKSPPGKK  300
MELPSFKMDK LDFRNKELPV FDEPVYGMSP PDAFYGLEFY GADIICPGSI MAMMSSSLGA  360
QCGAEEMMTA RDLDAAGPLH EDLMQMSLED FEECSPSTGG MWAHYSMSVA QAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19164229672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248RRKKKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646729.10.0AP2-domain-containing protein
TrEMBLI0YUW60.0I0YUW6_COCSC; AP2-domain-containing protein
STRINGXP_005646729.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.17e-15cytokinin response factor 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]