PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

e_gw1.9.913.1

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 468aa MW: 52436.1 Da PI: 10.0889

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
e_gw1.9.913.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	5	23	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++Cg++F ++ L rH+r e_gw1.9.913.1 5 CEKCGETFASRNALFRHLR 23 *****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.408	3	35	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MTTACEKCGE TFASRNALFR HLRHDDACRM TGEDASTSSA RASTREGVHK TSVGRVFDGL 60 GLSENVDVAR DGNAARASVT RVSSRKRECD MTKDEVRALN ERRRARAAKR KHERQNGEAR 120 AERDVDPASE LWIGGLRGRA GTMKGLRDTM WRAMPANSSI PQPGIKHLKR RGYRREKEWI 180 GYGFVTCRCP AEANALREAM DGKSVQGPDG IVSVLRVLPA ARKRVVASEG EPVPRILAAG 240 EHPDARQIFM AWTARDLEMR ATTRGLDHNA LIEDAKRFAS PYVSLRGVAF DAEATRRLRD 300 ELLRTKWPTQ TQRRSVKSDG YLVLKRETSP RDPYAALKAA CEALMMKADP SFPYDSLAIT 360 KNFISSAHVD RDDKSFQYAM SFGDFTGGGE LCVESRDGAT RWMIDTRERL AKFDGRSVHW 420 VRGYDGDRFS VVWYVNRESN FTAQRFDVDA TFVDEPTPKS SSRCVVR*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MTTACEKCGE TFASRNALFR HLRHDDACRM TGEDASTSSA RASTREGVHK TSVGRVFDGL  60
GLSENVDVAR DGNAARASVT RVSSRKRECD MTKDEVRALN ERRRARAAKR KHERQNGEAR  120
AERDVDPASE LWIGGLRGRA GTMKGLRDTM WRAMPANSSI PQPGIKHLKR RGYRREKEWI  180
GYGFVTCRCP AEANALREAM DGKSVQGPDG IVSVLRVLPA ARKRVVASEG EPVPRILAAG  240
EHPDARQIFM AWTARDLEMR ATTRGLDHNA LIEDAKRFAS PYVSLRGVAF DAEATRRLRD  300
ELLRTKWPTQ TQRRSVKSDG YLVLKRETSP RDPYAALKAA CEALMMKADP SFPYDSLAIT  360
KNFISSAHVD RDDKSFQYAM SFGDFTGGGE LCVESRDGAT RWMIDTRERL AKFDGRSVHW  420
VRGYDGDRFS VVWYVNRESN FTAQRFDVDA TFVDEPTPKS SSRCVVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001420199.1	0.0	predicted protein
TrEMBL	A4S435	1e-180	A4S435_OSTLU; Uncharacterized protein
STRING	ABO98492	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6432	3	3