PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.9.712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 104aa MW: 12323 Da PI: 10.7737 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.5e-17 | 4 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed ll ++v ++G+ +W+ Iar + gR +kqc++rw+++l e_gw1.9.712.1 4 KGQWTADEDALLTELVDKYGTTRWSYIARALY-GRVGKQCRERWNNHL 50 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.5e-18 | 56 | 98 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+W+ E+e +++a+ +lG++ W+ Ia+++ gRt++++k++w+ e_gw1.9.712.1 56 RGAWSVKEEETFIQAHMELGNK-WSHIAKRLK-GRTENSVKNHWN 98 89********************.********9.***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.27 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 3 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 3 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 5 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-10 | 7 | 50 | No hit | No description |
Pfam | PF13921 | 1.2E-16 | 7 | 65 | No hit | No description |
PROSITE profile | PS51294 | 21.349 | 55 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 55 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.31E-9 | 58 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-20 | 59 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MKLKGQWTAD EDALLTELVD KYGTTRWSYI ARALYGRVGK QCRERWNNHL APDIKRGAWS 60 VKEEETFIQA HMELGNKWSH IAKRLKGRTE NSVKNHWNAT RRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-40 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-40 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022839809.1 | 8e-56 | SANT/Myb domain, partial | ||||
Swissprot | Q9S7L2 | 2e-44 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A090M598 | 2e-54 | A0A090M598_OSTTA; SANT/Myb domain (Fragment) | ||||
TrEMBL | A0A1Y5I8E4 | 3e-55 | A0A1Y5I8E4_OSTTA; Homeodomain-like protein (Fragment) | ||||
STRING | A0A090M598 | 3e-55 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 7e-47 | myb domain protein 98 |
Publications ? help Back to Top | |||
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