PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.8.415.1 | ||||||||
Common Name | COCSUDRAFT_15840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C3H | ||||||||
Protein Properties | Length: 128aa MW: 14591.7 Da PI: 9.2184 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.5e-09 | 46 | 62 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +tG C++GdrC++aH e_gw1.8.415.1 46 KKTGSCPRGDRCPYAHN 62 79**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.83E-7 | 36 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.244 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-7 | 42 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-8 | 42 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 62 | 72 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
QLQVLPCCKR FVHDWSDCPF SHPGEKARRR DPKVHQYTGI ACPDMKKTGS CPRGDRCPYA 60 HNVFEYWLHP TRYRSQLCND GPKCRRRVCF FAHTIDQLRV PSSKPISSSD APDLQVPATN 120 PPNTRVI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005647514.1 | 6e-91 | hypothetical protein COCSUDRAFT_15840, partial | ||||
Swissprot | Q9FU27 | 3e-42 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | I0YX51 | 1e-89 | I0YX51_COCSC; Uncharacterized protein (Fragment) | ||||
STRING | XP_005647514.1 | 2e-90 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP60 | 15 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 5e-43 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17040958 |
Publications ? help Back to Top | |||
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