PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.2.463.1
Common NameCOCSUDRAFT_12361
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 333aa    MW: 37086 Da    PI: 8.233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.2.463.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08323526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   lCrf+ + G C+yG++C+++H+
  e_gw1.2.463.1  3 LCRFHTQ-GNCRYGSSCRYSHD 23
                   8995555.*************7 PP
2zf-CCCH25.22.9e-083151526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    C++f++ G+C yG rC+FaH 
  e_gw1.2.463.1 31 VCSYFLA-GYCAYGRRCHFAHL 51
                   6******.*************6 PP
3zf-CCCH21.83.4e-0793114425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     +C+ ++r+G+C++G++Ck  H
  e_gw1.2.463.1  93 DICPEYSRSGFCSRGASCKWTH 114
                    68****************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0066124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6324IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-6323IPR000571Zinc finger, CCCH-type
SMARTSM003560.00222652IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6952653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-52954IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-73050IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-53152IPR000571Zinc finger, CCCH-type
SMARTSM003560.0389116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.66289117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-590115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-493115IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-593115IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.78E-14157230No hitNo description
Gene3DG3DSA:3.30.40.102.5E-13160227IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.31E-4165225No hitNo description
PROSITE profilePS5008912.504166222IPR001841Zinc finger, RING-type
SMARTSM001846.1E-7166221IPR001841Zinc finger, RING-type
PfamPF000971.3E-8166221IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180189198IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.62251279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896251280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
RILCRFHTQG NCRYGSSCRY SHDLSSVPSQ VCSYFLAGYC AYGRRCHFAH LQPDGTPLPG  60
EHIEAPRTEE PASQASSVTQ QLQAFGGCRQ AHDICPEYSR SGFCSRGASC KWTHGVYCQA  120
SILCVQTCQK FALDPTDPEQ RAEHGSGCLR RHQRIQALAM SQEVECNICM EVVMAKDRVS  180
ERKFGLLSCD HAFCLGCIRS WRNNVESGAD VSTALRTCPV CRQTTHFVTP SMTWPTSRED  240
KAAILDTYKC KLSQIDCRLF SFGEGSCPFG TSCMYRHAYK NGHLEVSMFK QKWLNAEGEV  300
EGVRSSRLSD FVASSLQAQQ ALRRSLRPGV RA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651225.10.0hypothetical protein COCSUDRAFT_12361, partial
TrEMBLI0Z7R20.0I0Z7R2_COCSC; Uncharacterized protein (Fragment)
STRINGXP_005651225.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.26e-79C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]