PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.19.315.1 | ||||||||
Common Name | COCSUDRAFT_19782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C3H | ||||||||
Protein Properties | Length: 128aa MW: 14409.4 Da PI: 8.0064 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.8 | 5.9e-11 | 70 | 90 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ GtCk+Gd+C+FaHg e_gw1.19.315.1 70 ACPDFRK-GTCKRGDQCPFAHG 90 5******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.62E-6 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.328 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-8 | 65 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 70 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-9 | 70 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MQGAHVPDVI PLQGNLLDAE FRTDDFRINY FKVTECSNIE PHDWTLCAFA HVGEKARRRG 60 TAAFKYVATA CPDFRKGTCK RGDQCPFAHG VFESWLHPGR YRTQLCKDGL ECDRPVCFFA 120 HSIKASL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005643920.1 | 2e-92 | hypothetical protein COCSUDRAFT_19782 | ||||
Swissprot | Q9LXV4 | 7e-43 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | I0YLV7 | 5e-91 | I0YLV7_COCSC; Uncharacterized protein | ||||
STRING | XP_005643920.1 | 9e-92 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP60 | 15 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 3e-45 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Entrez Gene | 17037316 |
Publications ? help Back to Top | |||
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