PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.17.282.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24554 Da PI: 5.479 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.5e-09 | 67 | 116 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++a+ rE+ RRd +Ns++++L +l skK +K + + A++ Ik L e_gw1.17.282.1 67 KKAKRTREKLRRDSLNSRYQQLSVVLELG---ESKKSDKEALVSAATDLIKRL 116 68899******************999998...9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.26E-8 | 60 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.02E-5 | 63 | 120 | No hit | No description |
PROSITE profile | PS50888 | 10.976 | 65 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-5 | 67 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.005 | 71 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVPANDWLSN FLKDLDEEQT TAPDVVNSGE PTDEATGLGS LDVLTAVDAP SRPTTLKPST 60 TLSEQTKKAK RTREKLRRDS LNSRYQQLSV VLELGESKKS DKEALVSAAT DLIKRLRAEQ 120 VRLANMIMRF QDEKLQKADL LRALAMEREQ LVKEKAQLLE EKLHVEGHLQ RFLVSMPFAS 180 PMRDMVSTKS TSGVPAWTMP APFAPANEEE DNVTLRPPVA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422567.1 | 1e-59 | predicted protein | ||||
TrEMBL | A4SB73 | 3e-58 | A4SB73_OSTLU; Uncharacterized protein | ||||
STRING | ABP00884 | 5e-59 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5460 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-15 | bHLH family protein |