PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.13.607.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 293aa    MW: 32515.3 Da    PI: 10.8122
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.13.607.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.2e-13141191156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s y+GV+ d ++g+++AeI+         + s+g++  + eAa+a+++a+  l+ge
  e_gw1.13.607.1 141 SEYRGVTKDARTGKYRAEIYSG-----GESLSVGTYAAEIEAAEAYDRAAITLRGE 191
                     569***************9883.....4**********99*************997 PP
2AP223.61.3e-07236286149
             AP2   1 sgykGV.rwdkkrgr......WvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                     s++ GV r+ ++++       W+AeI +      + k+ +lg+f  + eAa+a +++
  e_gw1.13.607.1 236 SKHEGVrRYEHRWKNgnvtvkWRAEITV------NgKKKQLGYFEKEAEAARAVEKF 286
                     7999**889999999*************......44**********99****98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.002852111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-652105IPR001471AP2/ERF domain
PRINTSPR003675.0E-55364IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-853101IPR016177DNA-binding domain
SuperFamilySSF541712.03E-12141199IPR016177DNA-binding domain
SMARTSM003802.4E-12142204IPR001471AP2/ERF domain
PROSITE profilePS5103213.867142198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-13142198IPR001471AP2/ERF domain
PfamPF008471.7E-9142191IPR001471AP2/ERF domain
PRINTSPR003675.0E-5180200IPR001471AP2/ERF domain
PROSITE profilePS510328.663237292IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-5255285IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MPAPRASTAR ARSTKRPRSS SSAPGASRAP RPRTAPADPF SRPRADDADG RRFCGVVARP  60
AGRYRAFVWC DGKTHALGAF DRAEDAAMMH DRARIVIGKE TKNFKASRYD ASERARWSRD  120
SYTLIDLRRE YGAMREGRTH SEYRGVTKDA RTGKYRAEIY SGGESLSVGT YAAEIEAAEA  180
YDRAAITLRG EAATTNFSAR KYANDPAMRG MEGSLDKFRD SLASLKTRKN GGKSTSKHEG  240
VRRYEHRWKN GNVTVKWRAE ITVNGKKKQL GYFEKEAEAA RAVEKFTRDA AA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP552679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-07AP2 family protein