PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9907_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 535aa    MW: 56149.1 Da    PI: 8.3743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9907_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056789123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C++C+k F r  nL+ H r H
  cra_locus_9907_iso_1_len_2235_ver_3 67 FVCEICNKGFQRDQNLQLHRRGH 89
                                         89*******************88 PP
2zf-C2H213.80.00017143165123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC+ C+k +   s+ k H++t+
  cra_locus_9907_iso_1_len_2235_ver_3 143 WKCERCSKKYAVMSDWKAHMKTC 165
                                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.48E-76689No hitNo description
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PfamPF121718.6E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355240108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.48E-7138164No hitNo description
SMARTSM00355100143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MNKASPITTV VSSATEEANG ISSAAGNQTI APQAVLTKRK RNLPGMPDPD AEVIALSPTT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRNG KEVKKRVYVC PEVTCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCERCSK KYAVMSDWKA HMKTCGTREY RCDCGTLFSR  180
RDSFITHRAF CDALAQESAK SHSLTITNEE GTLKLQDATT TTTSSSSPPP PPLTPSTGVL  240
SPVLSIQSSE LPENQNGPAQ QQPTTAHQIS METVATTTTT PTSNAAAAPA SVSSPTSSAN  300
VSSSAGVFSG MMLRASATAG LAQSSQSPTS FSSLLCAMEP VSLSLSSSLY LSDNAPSLFP  360
TSSQDQPRHY ATNAQPAALS ATALLQKAAQ IGATTSGSSF LRGLGLALPS SSDLQDTNIP  420
TTAGNIASGI NWSSHVKPEN GCFVVPGLGL GLPSDTSPAV MMGPPTMYTV KPTTLDLLGL  480
GIGPDGAPSD GFSAYLTSIG GGGLDVAAAA SSFGNVNMSG NSWDDSSSDR KPTFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34139208372Zinc finger protein JACKDAW
5b3h_F1e-34139208372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091744.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-146IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A068UGC60.0A0A068UGC6_COFCA; Uncharacterized protein
STRINGVIT_18s0001g12220.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]