PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9764_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 299aa    MW: 33206.6 Da    PI: 7.3934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9764_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1545135198
                                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                         f+k +++s+v+k  +l lp kf++ h    ++ +k++tledesg ++e ++   +++g+  l++GW +F+ a++L
  cra_locus_9764_iso_1_len_986_ver_3  45 FIKLMLRSHVTKGFWLGLPAKFCKMHlP--SNDEKKVTLEDESGAEYETNF--LGYKGG--LGGGWAGFAMAHNL 113
                                         89*********************99953..446679***************..999988..9************* PP

                                         -TT-EEEEEE-SSSEE..EEEEE- CS
                                  B3  75 kegDfvvFkldgrsefelvvkvfr 98 
                                          egD   + l++  +f  +v ++r
  cra_locus_9764_iso_1_len_986_ver_3 114 LEGDAAGLPLVRPCKF--KVYIVR 135
                                         ****998888876777..666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-1538136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-1839136IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-1743135No hitNo description
SMARTSM010194.0E-1845137IPR003340B3 DNA binding domain
PfamPF023622.5E-1345135IPR003340B3 DNA binding domain
PROSITE profilePS5086311.05345137IPR003340B3 DNA binding domain
PfamPF052664.7E-8168273IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGCTQCECSP DSLNVINVRK SVEDCPVVAR TKEVQANLDA QFPSFIKLML RSHVTKGFWL  60
GLPAKFCKMH LPSNDEKKVT LEDESGAEYE TNFLGYKGGL GGGWAGFAMA HNLLEGDAAG  120
LPLVRPCKFK VYIVRSASSG KVDGAVGLLT LENHTSGRAF EIISPQSSSQ ELNARLAAGI  180
ILKTVQIAEK IKACEISTPL EDFAVWDKTL EGFELLGMEV GFLRAQLNKL ILFAIESEES  240
PSAKRYMEAK LVELQQVRTR LETEIQTLNM KKQNNQLRFR EKANAPWXXG KAWLHEMIX