PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9747_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family EIL
Protein Properties Length: 658aa    MW: 72584.7 Da    PI: 6.3783
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9747_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3440.81.2e-134353751316
                                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvY 74 
                                          eel++rmwkd+++lkrlker+k    +++ a++++ks++s++qarrkkmsraQDgiLkYMlk mevc+a+GfvY
  cra_locus_9747_iso_1_len_3547_ver_3  35 EELERRMWKDRVKLKRLKERQKLA--AQQ-AAEKQKSKQSTDQARRKKMSRAQDGILKYMLKLMEVCKARGFVY 105
                                          8*******************9963..354.599***************************************** PP

                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHH CS
                                 EIN3  75 giipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLL 148
                                          giipekgkpv+gasd++raWWkekv+fd+ngpaai+ky+a++l+  ++ ++  ++ s+++ l++lqD+tlgSLL
  cra_locus_9747_iso_1_len_3547_ver_3 106 GIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKVEGAGN--QNGSSQNVLQDLQDATLGSLL 177
                                          ********************************************9999988..5799***************** PP

                                          HHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHH CS
                                 EIN3 149 salmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptie 222
                                          s+lmqhcdppqr++plekgv+pPWWP+G+e+ww +lgl+k q  ppykkphdlkk+wkv+vLtavikhmsp+i+
  cra_locus_9747_iso_1_len_3547_ver_3 178 SSLMQHCDPPQRKYPLEKGVPPPWWPSGNEEWWIRLGLPKGQT-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIA 250
                                          *****************************************98.9***************************** PP

                                          HHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.......XXXXXXXXXXXXXXXXXXXXXX CS
                                 EIN3 223 eirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss.......slrkqspkvtlsceqkedvegk 287
                                          +ir+l+rqsk+lqdkm+akes ++lsvl++ee+++++ s++  ss       + r++++k  +s+++++dv+g 
  cra_locus_9747_iso_1_len_3547_ver_3 251 KIRRLVRQSKCLQDKMTAKESLIWLSVLSREEALVQQPSSDigSSgvseapsKGRSGKKKPSVSTDSDYDVDGI 324
                                          *****************************************87446777876667799999***********66 PP

                                          XXXX.XXXXXXXXXX.......................XXXXXXXXXXXXXX CS
                                 EIN3 288 keskikhvqavktta.......................gfpvvrkrkkkpse 316
                                          ++     ++++++ +                       g + + ++k++++ 
  cra_locus_9747_iso_1_len_3547_ver_3 325 DDGAGCVSSKDNQINqplevvpsalppnalqsipdkvnG-EEQPRKKRRRKP 375
                                          666645555555555677788888999988888887742.333333323222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.9E-12635282No hitNo description
Gene3DG3DSA:1.10.3180.104.7E-72157290IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.83E-61163285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MEEIGVDISS DIEVDDIRCD NIAEKDVSDE EIEAEELERR MWKDRVKLKR LKERQKLAAQ  60
QAAEKQKSKQ STDQARRKKM SRAQDGILKY MLKLMEVCKA RGFVYGIIPE KGKPVSGASD  120
NIRAWWKEKV KFDKNGPAAI AKYEAECLAK VEGAGNQNGS SQNVLQDLQD ATLGSLLSSL  180
MQHCDPPQRK YPLEKGVPPP WWPSGNEEWW IRLGLPKGQT PPYKKPHDLK KMWKVGVLTA  240
VIKHMSPDIA KIRRLVRQSK CLQDKMTAKE SLIWLSVLSR EEALVQQPSS DIGSSGVSEA  300
PSKGRSGKKK PSVSTDSDYD VDGIDDGAGC VSSKDNQINQ PLEVVPSALP PNALQSIPDK  360
VNGEEQPRKK RRRKPSTAIV QAAPSPNESD EPRVMVPDIN TNVDFAGYLM HEGQPEADRL  420
TPVNPLEKDV DAQLQLPASG LKNFSTVPSE NIVSGQQPLM TNTSLVHALV HNSEIVPYES  480
GLHSGSQDFQ LQGITEFPQL HNREPTSLPH YGHGSGFQRR TQHSLLQHNP GSSGLMPGVQ  540
NSGLPHLASY NLYHQPVGFG PARQGEQSGT SVSVLQPRMP SSDFSLPVPE KNGGEVTDGG  600
FSHCFKDTFQ NEQHRSVENH LAVPPLEGLS PDFSSSFLDG AAFDDYLLGD DLIEYLAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-731622909139ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366374PRKKRRRKP
2367373RKKRRRK
3367374RKKRRRKP
4368373KKRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095299.10.0ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
RefseqXP_027095364.10.0ETHYLENE INSENSITIVE 3-like 3 protein isoform X2
SwissprotO231161e-180EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A068V2H50.0A0A068V2H5_COFCA; Uncharacterized protein
STRINGXP_009788577.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]