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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9739_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 22257.9 Da PI: 10.1684 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 178 | 200 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C++ F+ ++ L++H + H cra_locus_9739_iso_2_len_768_ver_3 178 SCHKCNEQFTKWEALETHHLSrH 200 7*****************99878 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 179 | 200 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MPAVWFALKK SLHCKSEPAE VHDPKANGNL SSILTKKTGR SGCSRSIANL RDVIHGSKRH 60 IEKPTICSPR SIGSSELLNP ITHEVVLSNS TCELKISGYG FQDNNVSGGP GGAGVSSFVG 120 TLKPGTPGPG GHHYKPKGLG SPMRRTGTSL SKRRGSGFGT ISSKPSFGVD SHGFTTLSCH 180 KCNEQFTKWE ALETHHLSRH AVTELLEGX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027161740.1 | 3e-99 | uncharacterized protein LOC113762475 | ||||
TrEMBL | A0A068VJQ8 | 5e-96 | A0A068VJQ8_COFCA; Uncharacterized protein | ||||
STRING | XP_009588899.1 | 3e-92 | (Nicotiana tomentosiformis) |