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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_96029_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 112aa MW: 12470.4 Da PI: 11.3264 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52 | 9.8e-17 | 12 | 46 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+tt TplWR gp g+k+LCnaCG++y kk++ cra_locus_96029_iso_1_len_334_ver_3 12 CDGCHTTRTPLWRGGPGGPKSLCNACGIKYNKKRR 46 889*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.728 | 6 | 41 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.3E-9 | 6 | 64 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.14E-11 | 9 | 47 | No hit | No description |
CDD | cd00202 | 2.74E-10 | 11 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-14 | 11 | 46 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.5E-14 | 12 | 46 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
XKNSSRCTLK SCDGCHTTRT PLWRGGPGGP KSLCNACGIK YNKKRRQLLV LDTGRSNAKK 60 KRSGSMNRSS EEAREILKLR FIALGSKMVL QRSGNLMSKL REEERAALLL MA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 61 | KRRQLLVLDTGRSNAKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079598.1 | 7e-53 | GATA transcription factor 15 | ||||
Swissprot | Q8LG10 | 2e-24 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A2G9G6U2 | 1e-53 | A0A2G9G6U2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00108.1.p | 2e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Publications ? help Back to Top | |||
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