PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9524_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 347aa    MW: 39522.2 Da    PI: 6.9173
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9524_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.6e-50201471128
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                          lp+GfrFhP+deel+v+yL kk+++ +l++ ++++ev++yk++PwdLpkk++ +++ewyfF++rd+ky++g r+
  cra_locus_9524_iso_1_len_1146_ver_3  20 LPAGFRFHPSDEELIVHYLGKKANKFPLPA-SIVAEVELYKFNPWDLPKKCSFGDEEWYFFTPRDRKYPNGMRP 92 
                                          799***************************.88***************99999********************* PP

                                  NAM  75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                          nr++ sgyWkatg dk+++++ +++++g+kk Lvfy+g+ pkg+ktdW+mheyrl
  cra_locus_9524_iso_1_len_1146_ver_3  93 NRMAGSGYWKATGIDKPIVAScGSKVIGVKKALVFYTGKPPKGNKTDWTMHEYRL 147
                                          *******************9988899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5917182IPR003441NAC domain
PROSITE profilePS5100557.60420182IPR003441NAC domain
PfamPF023651.1E-2421147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
XGRGMNSMEK NPKSEIIFQL PAGFRFHPSD EELIVHYLGK KANKFPLPAS IVAEVELYKF  60
NPWDLPKKCS FGDEEWYFFT PRDRKYPNGM RPNRMAGSGY WKATGIDKPI VASCGSKVIG  120
VKKALVFYTG KPPKGNKTDW TMHEYRLPEP AAPAADSSWT TSTTKQNSMR LDEWVLCRVR  180
QKTGMNFGNF GEERNGLNNN NNNNKTVQKP QKTANYSTFE IVKDYDDLYY KEYGPMLPFL  240
FNDNSSSQDL ASTDQTTISF EGKNVKDSSS SSVCEDNFNI GIGIVNGKRK MFEDQDNIIS  300
HKKLAYQKEM ENDDDELLPI TPSSNNNNID QLCSSMMYQE LYTLAFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-6571822168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070342.11e-111NAC domain-containing protein 2-like
RefseqXP_027175978.11e-111NAC domain-containing protein 2-like
TrEMBLA0A068UGJ21e-108A0A068UGJ2_COFCA; Uncharacterized protein
STRINGVIT_08s0040g02110.t013e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133901117