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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9511_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1092aa MW: 122234 Da PI: 9.0887 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 11 | 44 | 3 | 38 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++eE ++++a +++G++ Wk++a+ + +R+ cra_locus_9511_iso_8_len_3599_ver_3 11 QWSKEELTRFYEAYRKYGKD-WKKVASAVR-NRSVD 44 6*****************99.*********.99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.696 | 7 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-4 | 8 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.32E-10 | 9 | 55 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-5 | 11 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.8E-8 | 11 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-5 | 12 | 46 | No hit | No description |
Pfam | PF06584 | 9.8E-33 | 599 | 699 | IPR033471 | DIRP domain |
SMART | SM01135 | 1.7E-54 | 599 | 700 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1092 aa Download sequence Send to blast |
KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY TMNRAYLSLP 60 EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG NSKASDVQIT 120 SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS PTRQGLRMKT 180 DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR AGLKSVNARN 240 VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD DSSDNHLDDI 300 KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA FDALQTLADL 360 SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV KVDRSSSRLG 420 VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV SESQEAEARD 480 IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS LPTSVRSRRK 540 RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL RRWCTYEWFY 600 SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSQQF LKEEKKKLNQ 660 YRDSVRKHYN DLREGTQEGL PTDLARPLSV GQRVIAIHPK TREIHDGNVL TVDHARCRVQ 720 FDRPELGVEF VMDIDCMPLN PLENIPTLLA RHIALDRFFE NFNELRTVER AKASPGGEVD 780 NFNGLSHSSP STYPVTNLLK QTKVAPEDTN MQARIVPTET SPYQQIPYPQ PCTSAQIQAK 840 EADIQAVAEL TRALDKKEAV VFELKRMNDD VVDDCSLKES EPFKKQYAAV LVQLQEANEQ 900 VSSSLFRLRQ RNTYRGTISL SWPRPIANVG DHLNSLERST CQPHESGTHA NEIIEGSRAK 960 ARTMVDIAMQ AMSSVKCREN TFEKIEEAID YVNEQLPLDD SCIPPVADPK SKCASDKNEA 1020 QIPAELITQC VATLLMIQKC TERQFPPADV AQILDSAVTS LKPCCSQNLS MYAEIQKCMG 1080 MIKNQILALI PT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 453 | 459 | RKKQKIR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073295.1 | 0.0 | protein ALWAYS EARLY 3-like | ||||
Refseq | XP_027184074.1 | 0.0 | protein ALWAYS EARLY 3 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A068UX25 | 0.0 | A0A068UX25_COFCA; Uncharacterized protein | ||||
STRING | XP_009595580.1 | 0.0 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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