PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9511_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 1102aa MW: 123308 Da PI: 9.0887

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9511_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.6e-09	21	54	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++eE ++++a +++G++ Wk++a+ + +R+ cra_locus_9511_iso_6_len_3628_ver_3 21 QWSKEELTRFYEAYRKYGKD-WKKVASAVR-NRSVD 54 6***************99.*******.99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.696	17	70	IPR017884	SANT domain
SuperFamily	SSF46689	2.09E-10	18	65	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-4	18	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-5	21	54	IPR009057	Homeodomain-like
Pfam	PF00249	7.9E-8	21	56	IPR001005	SANT/Myb domain
CDD	cd00167	1.19E-5	22	56	No hit	No description
SMART	SM01135	1.7E-54	609	710	IPR033471	DIRP domain
Pfam	PF06584	9.9E-33	609	709	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1102 aa Download sequence Send to blast
XLSLSLSLLQ KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY 60 TMNRAYLSLP EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG 120 NSKASDVQIT SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS 180 PTRQGLRMKT DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR 240 AGLKSVNARN VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD 300 DSSDNHLDDI KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA 360 FDALQTLADL SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV 420 KVDRSSSRLG VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV 480 SESQEAEARD IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS 540 LPTSVRSRRK RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL 600 RRWCTYEWFY SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSQQF 660 LKEEKKKLNQ YRDSVRKHYN DLREGTQEGL PTDLARPLSV GQRVIAIHPK TREIHDGNVL 720 TVDHARCRVQ FDRPELGVEF VMDIDCMPLN PLENIPTLLA RHIALDRFFE NFNELRTVER 780 AKASPGGEVD NFNGLSHSSP STYPVTNLLK QTKVAPEDTN MQARIVPTET SPYQQIPYPQ 840 PCTSAQIQAK EADIQAVAEL TRALDKKEAV VFELKRMNDD VVDDCSLKES EPFKKQYAAV 900 LVQLQEANEQ VSSSLFRLRQ RNTYRGTISL SWPRPIANVG DHLNSLERST CQPHESGTHA 960 NEIIEGSRAK ARTMVDIAMQ AMSSVKCREN TFEKIEEAID YVNEQLPLDD SCIPPVADPK 1020 SKCASDKNEA QIPAELITQC VATLLMIQKC TERQFPPADV AQILDSAVTS LKPCCSQNLS 1080 MYAEIQKCMG MIKNQILALI PT

Sequence ? help Back to Top

Protein Sequence Length: 1102 aa Download sequence Send to blast

XLSLSLSLLQ KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY  60
TMNRAYLSLP EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG  120
NSKASDVQIT SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS  180
PTRQGLRMKT DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR  240
AGLKSVNARN VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD  300
DSSDNHLDDI KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA  360
FDALQTLADL SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV  420
KVDRSSSRLG VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV  480
SESQEAEARD IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS  540
LPTSVRSRRK RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL  600
RRWCTYEWFY SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSQQF  660
LKEEKKKLNQ YRDSVRKHYN DLREGTQEGL PTDLARPLSV GQRVIAIHPK TREIHDGNVL  720
TVDHARCRVQ FDRPELGVEF VMDIDCMPLN PLENIPTLLA RHIALDRFFE NFNELRTVER  780
AKASPGGEVD NFNGLSHSSP STYPVTNLLK QTKVAPEDTN MQARIVPTET SPYQQIPYPQ  840
PCTSAQIQAK EADIQAVAEL TRALDKKEAV VFELKRMNDD VVDDCSLKES EPFKKQYAAV  900
LVQLQEANEQ VSSSLFRLRQ RNTYRGTISL SWPRPIANVG DHLNSLERST CQPHESGTHA  960
NEIIEGSRAK ARTMVDIAMQ AMSSVKCREN TFEKIEEAID YVNEQLPLDD SCIPPVADPK  1020
SKCASDKNEA QIPAELITQC VATLLMIQKC TERQFPPADV AQILDSAVTS LKPCCSQNLS  1080
MYAEIQKCMG MIKNQILALI PT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	463	469	RKKQKIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073295.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_027184074.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A068UX25	0.0	A0A068UX25_COFCA; Uncharacterized protein
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]