PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9430_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 564aa    MW: 63256 Da    PI: 8.9873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9430_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.98.8e-1916991099
                                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                                   B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                                         +++s  l +p k+a++++g + +     l  +sg++W  +l   +++g +++++GW  Fvk++ L++gD++vF+++
  cra_locus_9430_iso_8_len_2787_ver_3 16 SSSSESLKIPPKYAKHIDGTTLG--IAFLLGPSGNTWHANL--VRQDGDFFFQDGWAAFVKDHSLESGDSLVFRYN 87
                                         3455669*******888877544..79999***********..*******************************98 PP

                                         SSSEE..EEEEE-S CS
                                   B3 86 grsefelvvkvfrk 99
                                         g+  f  +v++f++
  cra_locus_9430_iso_8_len_2787_ver_3 88 GSLHF--TVQIFDQ 99
                                         85555..9**9997 PP
2B350.34.3e-16239333198
                                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkang 73 
                                          f kv+++ + + s  l +p +fa++h   ++++++++l +++g+sW v+ i  ++ + ++++ +GW +Fv++n+
  cra_locus_9430_iso_8_len_2787_ver_3 239 FMKVMKRFNISGSYTLNVPYQFATAHL--PNCKVKIVLHNLKGESWIVNSIPtTRVQTSHTFCGGWLSFVRDNN 310
                                          67777777777888899*********6..45999****************77566666699************* PP

                                          --TT-EEEEEE-SSSEE..EEEEE- CS
                                   B3  74 LkegDfvvFkldgrsefelvvkvfr 98 
                                          ++ gD+++F+l+++ e  l v+++r
  cra_locus_9430_iso_8_len_2787_ver_3 311 INMGDICIFELVHKCE--LQVHIIR 333
                                          **********998444..5899887 PP
3B359.65.7e-19456551199
                                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkang 73 
                                          f+ ++++ +v+ s  l +p +fa+e+     + +++tl++++g+ W+v+ i + k ++ +++ +GW  Fv++n+
  cra_locus_9430_iso_8_len_2787_ver_3 456 FVRIMKKFNVSGSYTLKIPYQFARENLP--DCRTEITLRNLKGKCWTVNSIPTTKVQTlHTFCGGWMAFVRDND 527
                                          566677778888999***********64..48889***************8877777789999*********** PP

                                          --TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                                          ++ gD+++F+l++  ++e++v++fr+
  cra_locus_9430_iso_8_len_2787_ver_3 528 IQMGDICIFELVD--KQEMRVHIFRN 551
                                          **********986..6778*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-222102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-225101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.0717100IPR003340B3 DNA binding domain
SMARTSM010193.4E-119100IPR003340B3 DNA binding domain
PfamPF023622.2E-161699IPR003340B3 DNA binding domain
CDDcd100178.87E-171798No hitNo description
SuperFamilySSF1019361.84E-23232334IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-23232334IPR015300DNA-binding pseudobarrel domain
CDDcd100174.49E-18237333No hitNo description
PfamPF023624.9E-14239333IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042239335IPR003340B3 DNA binding domain
SMARTSM010191.0E-13239335IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-26449552IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-26452558IPR015300DNA-binding pseudobarrel domain
CDDcd100178.00E-22454550No hitNo description
PfamPF023621.6E-16456551IPR003340B3 DNA binding domain
PROSITE profilePS5086314.381456552IPR003340B3 DNA binding domain
SMARTSM010197.4E-17456552IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MWNVKKPSFL VDFDPSSSSE SLKIPPKYAK HIDGTTLGIA FLLGPSGNTW HANLVRQDGD  60
FFFQDGWAAF VKDHSLESGD SLVFRYNGSL HFTVQIFDQT SCEKETAFCS ECSQDLSNSD  120
NHIVKKRARE NSTLLDCIIE GIPKRTRSAQ HRDLGNKNGC LEEAGSLDER TQGKILYAEN  180
NRSSALKSIV TVAVPSEENV AFESPEATIS NRTSKEELLL SAPEAERVAR AFTSSFPNFM  240
KVMKRFNISG SYTLNVPYQF ATAHLPNCKV KIVLHNLKGE SWIVNSIPTT RVQTSHTFCG  300
GWLSFVRDNN INMGDICIFE LVHKCELQVH IIRVTKEGME DCNEKGIHKT KVDGSCSAVK  360
KISRRKSKKI NVKSSNDSLQ WLTKVDKKGH GHDRVKFGSA LKSSPISSQS ISRELVIWEP  420
GSEGRLGSHT KGCVSMKSAP EEKVAAQSFV SSFPHFVRIM KKFNVSGSYT LKIPYQFARE  480
NLPDCRTEIT LRNLKGKCWT VNSIPTTKVQ TLHTFCGGWM AFVRDNDIQM GDICIFELVD  540
KQEMRVHIFR NSIKGIDYQT GRGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092259.10.0B3 domain-containing protein Os01g0723500-like isoform X2
RefseqXP_027094873.10.0B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A068UIZ60.0A0A068UIZ6_COFCA; Uncharacterized protein
STRINGXP_009781392.10.0(Nicotiana sylvestris)