PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9430_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 377aa    MW: 42743.9 Da    PI: 9.9689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9430_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.2e-1652146198
                                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkang 73 
                                          f kv+++ + + s  l +p +fa++h   ++++++++l +++g+sW v+ i  ++ + ++++ +GW +Fv++n+
  cra_locus_9430_iso_4_len_1710_ver_3  52 FMKVMKRFNISGSYTLNVPYQFATAHL--PNCKVKIVLHNLKGESWIVNSIPtTRVQTSHTFCGGWLSFVRDNN 123
                                          67777777777888899*********6..45999****************77566666699************* PP

                                          --TT-EEEEEE-SSSEE..EEEEE- CS
                                   B3  74 LkegDfvvFkldgrsefelvvkvfr 98 
                                          ++ gD+++F+l+++ e  l v+++r
  cra_locus_9430_iso_4_len_1710_ver_3 124 INMGDICIFELVHKCE--LQVHIIR 146
                                          **********998444..5899887 PP
2B360.52.9e-19269364199
                                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkang 73 
                                          f+ ++++ +v+ s  l +p +fa+e+     + +++tl++++g+ W+v+ i + k ++ +++ +GW  Fv++n+
  cra_locus_9430_iso_4_len_1710_ver_3 269 FVRIMKKFNVSGSYTLKIPYQFARENLP--DCRTEITLRNLKGKCWTVNSIPTTKVQTlHTFCGGWMAFVRDND 340
                                          566677778889999***********64..48889***************8877777789999*********** PP

                                          --TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                                          ++ gD+++F+l++  ++e++v++fr+
  cra_locus_9430_iso_4_len_1710_ver_3 341 IQMGDICIFELVD--KQEMRVHIFRN 364
                                          **********986..6778*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2345147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-2445147IPR015300DNA-binding pseudobarrel domain
CDDcd100176.49E-1850146No hitNo description
PfamPF023622.5E-1452146IPR003340B3 DNA binding domain
PROSITE profilePS5086313.04252148IPR003340B3 DNA binding domain
SMARTSM010191.0E-1352148IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-26262365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-26265371IPR015300DNA-binding pseudobarrel domain
CDDcd100179.42E-22267363No hitNo description
PfamPF023628.1E-17269364IPR003340B3 DNA binding domain
PROSITE profilePS5086314.381269365IPR003340B3 DNA binding domain
SMARTSM010197.4E-17269365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKYFYDXTHF SLNFEFGAEA TISNRTSKEE LLLSAPEAER VARAFTSSFP NFMKVMKRFN  60
ISGSYTLNVP YQFATAHLPN CKVKIVLHNL KGESWIVNSI PTTRVQTSHT FCGGWLSFVR  120
DNNINMGDIC IFELVHKCEL QVHIIRVTKE GMEDCNEKGI HKTKVDGSCS AVKKISRRKS  180
KKINVKSSND SLQWLTKVDK KGHGHDRVKF GSALKSSPIS SQSISRELVI WEPGSEGRLG  240
SHTKGCVSMK SAPEEKVAAQ SFVSSFPHFV RIMKKFNVSG SYTLKIPYQF ARENLPDCRT  300
EITLRNLKGK CWTVNSIPTT KVQTLHTFCG GWMAFVRDND IQMGDICIFE LVDKQEMRVH  360
IFRNSIKGID YQTGRGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092259.10.0B3 domain-containing protein Os01g0723500-like isoform X2
RefseqXP_027094873.10.0B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A068UIZ60.0A0A068UIZ6_COFCA; Uncharacterized protein
STRINGXP_009781392.11e-160(Nicotiana sylvestris)