PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9369_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 285aa MW: 32156.4 Da PI: 4.5939

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9369_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.2	1.5e-32	95	151	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers++dp++++itYeg H h cra_locus_9369_iso_2_len_1096_ver_3 95 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCAAKKQVERSSDDPDTLIITYEGLHLH 151 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-30	88	151	IPR003657	WRKY domain
PROSITE profile	PS50811	28.277	89	154	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	90	151	IPR003657	WRKY domain
SMART	SM00774	2.1E-36	94	153	IPR003657	WRKY domain
Pfam	PF03106	4.9E-26	95	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEELHQSNGF ADELVRELLD SDSQLFLIPQ LAMEPAIEEI EGALSLANYT MKNQQYGDLS 60 QTRISTLERD LTSRAHDNNY RYTLRIKSCD SAMTDDGYKW RKYGQKSIKN SPNPRSYYRC 120 TNPRCAAKKQ VERSSDDPDT LIITYEGLHL HFAYPFFHLN QQHHQPLVEN VTIEETEEIS 180 SSDSEEGRQE MNESSSAAGK IQIISSSKQI IPNLSYPATE LEQEEFENGG TNNISQGLLE 240 DVVPLVVRKP YVMTSSSTSH FSSPPTSPST ISWSPDDSSP ARFGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	93	155	13	75	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070465.1	9e-75	probable WRKY transcription factor 49
TrEMBL	A0A068UG40	1e-73	A0A068UG40_COFCA; Uncharacterized protein
STRING	XP_004302766.1	2e-70	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12075	21	24