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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9338_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 166aa MW: 19636.3 Da PI: 10.1672 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.8e-08 | 40 | 82 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + q++++++ + cra_locus_9338_iso_3_len_495_ver_3 40 AWTHQEEESFFSALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 82 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-10 | 32 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.458 | 36 | 87 | IPR017884 | SANT domain |
SMART | SM00717 | 6.0E-4 | 37 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-6 | 38 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.63E-4 | 40 | 83 | No hit | No description |
Pfam | PF00249 | 3.0E-6 | 40 | 82 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
XGLHPENVVI VDGASGASKS LQDHAAPQQP VKKQTRQWAA WTHQEEESFF SALRQVGKNF 60 EKITCRVQSK NKDQVRHYYY RLVRRMNKLL GPELWLDAKN SKDTNAAMLR WWSLLEKYSC 120 KASKLHLKPR RFKLIVETLV CLFYILCMIF LNETFHFHSI YIFMHX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027126551.1 | 2e-75 | TSL-kinase interacting protein 1-like | ||||
Swissprot | Q8LJT8 | 9e-66 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A2G9H0X9 | 5e-73 | A0A2G9H0X9_9LAMI; Polycomb-group transcriptional regulator | ||||
STRING | VIT_08s0040g01460.t01 | 8e-73 | (Vitis vinifera) | ||||
STRING | XP_008387567.1 | 9e-75 | (Malus domestica) |