PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

cra_locus_9331_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 252aa MW: 28203.3 Da PI: 6.5905

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9331_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.7	1.4e-09	86	132	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka ++ Lee+vk+L N++L+k++++ cra_locus_9331_iso_2_len_1225_ver_3 86 KPKKRNSGNREAVRKYREKKKAHTAYLEEEVKKLRFVNQQLIKKVQR 132 67789999***********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-12	82	149	No hit	No description
SMART	SM00338	2.7E-7	82	149	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.634	84	132	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.63E-7	86	132	No hit	No description
Pfam	PF07716	9.3E-13	86	132	IPR004827	Basic-leucine zipper domain
CDD	cd14686	2.24E-9	94	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDDGEEVSDH IFLQNSDSSS NIQTSDSFLD DLLRNAQTCT HTHTCNPPGP DSAAHTHTCY 60 HTHTQVIPSE EIDVQTEIIK TSTTSKPKKR NSGNREAVRK YREKKKAHTA YLEEEVKKLR 120 FVNQQLIKKV QRQAVLESEI LRLRGILFDF RSKIDGELGA FPFSKQCNSN TSLREGDCGI 180 QMKIRCEDDL PCFHPQTNLM GGNCFPATVN CQINQDDAGI NAETLVLSAS QAEXSSRASS 240 TSVVLRWQAI LT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459164.1	4e-87	PREDICTED: uncharacterized protein LOC105779789
Refseq	XP_012459165.1	4e-87	PREDICTED: uncharacterized protein LOC105779789
Refseq	XP_012459166.1	4e-87	PREDICTED: uncharacterized protein LOC105779789
TrEMBL	A0A0D2RZM3	1e-85	A0A0D2RZM3_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TKM6	9e-86	A0A0D2TKM6_GOSRA; Uncharacterized protein
STRING	Gorai.012G081200.1	2e-86	(Gossypium raimondii)