PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_931_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 397aa    MW: 43098.3 Da    PI: 6.012
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_931_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-171461148
                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                        +g+WT eEd++l+  ++++G g+W++ +++ g+ R++k+c++rw +yl
  cra_locus_931_iso_4_len_1454_ver_3 14 KGPWTSEEDDKLISFIQKHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                                        79********************************************97 PP
2Myb_DNA-binding52.89e-1767112148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                         rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  cra_locus_931_iso_4_len_1454_ver_3  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.165961IPR017930Myb domain
SuperFamilySSF466898.03E-3011108IPR009057Homeodomain-like
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001671.73E-101661No hitNo description
PROSITE profilePS5129425.89162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1667112IPR001005SANT/Myb domain
CDDcd001671.61E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010091Biological Processtrichome branching
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGRSPCCDET GLKKGPWTSE EDDKLISFIQ KHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLSTADGQ SKDAANLSHM AQWESARLEA EARLVRQSKL RSNNNTSSFQ  180
NTLQEFSNSP SSPLSKSPVV VPPRCLDILK AWNGVWTNPN ESSTASAVAA VSVAGGLVGD  240
VESPTSTLSS NGIGDHNSTA FFEFVGNNSS GSNCEXGGGI MKEEGEEDWK GFENSNNLGE  300
NSITFTTSSE IHDLTVPMDH VGDNVIAGST FVERFTDLLL STSGDRSFSE GCGESDNGGV  360
TAGSGGGSTS EYLEDNKNYW NSILNLVNSS PSDSAMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-27121162105C-Myb DNA-Binding Domain
1msf_C2e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151487.10.0transcription factor MYB16
SwissprotQ9LE631e-120MY106_ARATH; Transcription factor MYB106
TrEMBLA0A068U3S80.0A0A068U3S8_COFCA; Uncharacterized protein
STRINGXP_009792075.11e-180(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154