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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9268_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 344aa MW: 40244.6 Da PI: 7.1352 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.3e-11 | 79 | 120 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W + E++ll++++k++G g+W +a+++g ++ + qc +++++ cra_locus_9268_iso_9_len_1677_ver_3 79 WNAKEELLLLEGIKMYGFGNWYEVAEHVG-TKDRTQCLDHYNS 120 *****************************.999999*****85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 8.0E-101 | 7 | 343 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 2.5E-6 | 15 | 60 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 1.65E-12 | 19 | 82 | No hit | No description |
PROSITE profile | PS50135 | 9.969 | 19 | 62 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 5.28E-17 | 19 | 67 | No hit | No description |
Pfam | PF00569 | 1.0E-6 | 19 | 51 | IPR000433 | Zinc finger, ZZ-type |
PROSITE pattern | PS01357 | 0 | 21 | 48 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 2.09E-12 | 74 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 20.331 | 74 | 126 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-8 | 75 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 78 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 78 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.74E-9 | 79 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
METAYAGEGQ TVREEKVFYQ CNYCNKDIYR KIHIKCLRCS DFNLCVECFS VAAEVYPHRS 60 NHPYTVMDNL FFPLMCTDWN AKEELLLLEG IKMYGFGNWY EVAEHVGTKD RTQCLDHYNS 120 IYVHSPCVPV QEKYTEHLSM AHRQIIKDVS TKSVCDGNNA LAEGAKRAPG VIESNDSHSK 180 SKEDCNAEGS VREKQARTSV EFVTEYGNDA QQLLADIEFK ETDTDDEREL KLRVLRFYSK 240 RLDERKCRKK FLLERNLLHP HLVETYLSPE EKEICRPYRV FMRYHSTEEH ANLLRTVVEE 300 HRIRKRIQDL KDARAAGCRT PTEVERYIEQ KSKRMKESTR AGPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 1e-23 | 19 | 132 | 5 | 118 | Transcriptional adapter 2 |
6cw3_G | 1e-23 | 19 | 132 | 5 | 118 | Transcriptional adapter 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803649.1 | 1e-134 | PREDICTED: transcriptional adapter ADA2-like isoform X3 | ||||
Refseq | XP_016449025.1 | 1e-134 | PREDICTED: transcriptional adapter ADA2-like isoform X2 | ||||
Swissprot | Q75LL6 | 1e-111 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A1S3Y9Y1 | 1e-132 | A0A1S3Y9Y1_TOBAC; Transcriptional adapter | ||||
TrEMBL | A0A1U7YWU6 | 1e-132 | A0A1U7YWU6_NICSY; Transcriptional adapter | ||||
STRING | XP_009803647.1 | 1e-132 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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