PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_92198_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 94aa    MW: 10901.8 Da    PI: 7.4093
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_92198_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-071558344
                                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                          WT+   +++ +a + + ++   +W  Iar +  g+++++++ ++
  cra_locus_92198_iso_1_len_281_ver_3 15 CWTAKQNKQFEEALAYYDKDtpdRWYNIARAVE-GKSAEEVRRHY 58
                                         6********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.2231166IPR017884SANT domain
SMARTSM007171.6E-51264IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-121469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-51668IPR009057Homeodomain-like
CDDcd001678.46E-51658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
PGSITSSRNS SSSSCWTAKQ NKQFEEALAY YDKDTPDRWY NIARAVEGKS AEEVRRHYEI  60
LVKDIMQIEA DQIPLPNYRS THRAYANEQR XCNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-311181676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.12e-44protein RADIALIS-like 3
SwissprotQ1A1739e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A068UIQ11e-40A0A068UIQ1_COFCA; Uncharacterized protein
STRINGXP_009611761.13e-38(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231