PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9088_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 344aa    MW: 37407.5 Da    PI: 4.7127
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9088_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22e-36241152102
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++      
  cra_locus_9088_iso_1_len_1785_ver_3  24 FLTKTYQLVDDPAIDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR------ 91 
                                          9*****************************************************************99...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkks 102
                                             weF++++F++g+k ll++i+r+k 
  cra_locus_9088_iso_1_len_1785_ver_3  92 ---WEFANEYFRRGEKGLLRDIQRRKI 115
                                          ...*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.5E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.25E-3621113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPVEQTGESP AGGGDSQRSL PTPFLTKTYQ LVDDPAIDDL ISWNEDGTTF IVWRPAEFAR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFANEYFR RGEKGLLRDI QRRKISPTAV  120
AAPAVQATTS AAVAVNAQAV TVAVPAAIRI ISPTNSGDEQ VLSSNSSPAA TATTTAIRAT  180
SCTTTPEILE ENERLRKENA QLNQELNRLR SLCGNIYNLM SSYAVNQPET SGGGSIGGAL  240
ELLSARLNTA EMECGDGSDG GGMKAELQED VCPRLFGVSI GAKRVRRNDD EEDTTTRQQG  300
SKEQVHPPQT SDVKSEPLDS GGTGSREEPS WLDIRMSCKS DGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251011315129Heat shock factor protein 1
5d5v_B1e-251011315129Heat shock factor protein 1
5d5v_D1e-251011315129Heat shock factor protein 1
5hdg_A6e-262411310110Heat shock factor protein 1
5hdn_A6e-262411310110Heat shock factor protein 1
5hdn_B6e-262411310110Heat shock factor protein 1
5hdn_C6e-262411310110Heat shock factor protein 1
5hdn_D6e-262411310110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083096.11e-154heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-101HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S3XXH51e-138A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBLA0A1U7V7G91e-138A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRINGXP_009760921.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]