PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

cra_locus_898_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 151aa MW: 16925 Da PI: 10.061

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_898_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2e-32	56	112	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF cra_locus_898_iso_3_len_1461_ver_3 56 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGTGGRF 112 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.8E-36	54	115	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.559	55	115	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-27	57	112	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.4E-24	58	80	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	60	80	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.4E-24	89	112	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
QAQAAYPYPD PYYRSIFAPY DAQPYPAQPY PAPPMVHLQL MGIQQAGVPL PSDAVEEPVF 60 VNAKQYHGIL RRRQSRAKAE SENKALKSRK PYLHESRHLH ALRRARGTGG RFLNAKKGEN 120 KPKDAESGDK PQSNINLNAE KNDHLPSENA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	55	120	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087816.1	2e-89	nuclear transcription factor Y subunit A-7-like
Refseq	XP_027184808.1	2e-89	nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-59	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A068V9V1	1e-87	A0A068V9V1_COFCA; Uncharacterized protein
STRING	VIT_10s0003g04650.t01	1e-85	(Vitis vinifera)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]