![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_8986_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 374aa MW: 42720.2 Da PI: 5.8797 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 247.6 | 4.8e-76 | 28 | 314 | 3 | 292 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsse 76 +lL ecA a+s++d +++++l + l+elasp+gd q+la+yf++A + ++s++++yk+l++ ++++++ ++ cra_locus_8986_iso_3_len_1118_ver_3 28 RLLRECAVAISEKDSNKIHHLFWMLNELASPYGDCDQKLASYFLQAFFCKTTESGQRCYKILASVAEKSHSFDS 101 6899**********************************************************999998666555 PP GRAS 77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgsp 150 + + f+evsP+ +f+h + N aIlea+ege+++HiiD++ + ++QWp+Ll+aLa R++++p+l++T+v + cra_locus_8986_iso_3_len_1118_ver_3 102 AKKLILKFQEVSPWTTFGHAASNGAILEALEGENKLHIIDISNTLCTQWPTLLEALAIRNDETPHLKLTVVIAT 175 5555556******************************************************************8 PP GRAS 151 esgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223 + +++ ++e+ +r++kfA+ +gvpfefnv+ ++l +l+ e+L+++++Ea+a+n++ +l r+ +e+ cra_locus_8986_iso_3_len_1118_ver_3 176 NIVKSSIMKEISQRMKKFARLMGVPFEFNVIsGLNHLGELTKESLNIQNDEAIAINCIGALRRIQ-----VEE- 243 988***************************955679****************************7.....444. PP GRAS 224 rdevLklvkslsPkvvvvveqeadh.nse.sFlerflealeyysalfdsleaklpreseerikvErellgr 292 r++++k++ sl+P+vv++ve+ead ns +F++ f e+l++ + f++le+++p++s+er ++Ere+ +r cra_locus_8986_iso_3_len_1118_ver_3 244 RSDMIKMLLSLNPRVVTIVEEEADFsNSRiDFVKCFEECLRFTTLYFEMLEESFPPTSNERLMLEREYGQR 314 779*********************9655469***********************************98655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.686 | 1 | 374 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-73 | 28 | 314 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
XTSTSKSTDY GEPTRDDSDG GRKQWAPRLL RECAVAISEK DSNKIHHLFW MLNELASPYG 60 DCDQKLASYF LQAFFCKTTE SGQRCYKILA SVAEKSHSFD SAKKLILKFQ EVSPWTTFGH 120 AASNGAILEA LEGENKLHII DISNTLCTQW PTLLEALAIR NDETPHLKLT VVIATNIVKS 180 SIMKEISQRM KKFARLMGVP FEFNVISGLN HLGELTKESL NIQNDEAIAI NCIGALRRIQ 240 VEERSDMIKM LLSLNPRVVT IVEEEADFSN SRIDFVKCFE ECLRFTTLYF EMLEESFPPT 300 SNERLMLERE YGQRGFEKPL HRSDXSDDIV DDVKALLKRY RSGWSLRLPQ SDHESGIYLT 360 WKEDPVVWAS AWKP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-124 | 24 | 374 | 31 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-124 | 24 | 374 | 31 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027117536.1 | 0.0 | protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 1e-123 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A068U5L3 | 0.0 | A0A068U5L3_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0017s05450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |