![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_8963_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 272aa MW: 31223.8 Da PI: 6.9199 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.1e-07 | 174 | 221 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WT+eE++++ d vk ++ W+ + ++ g+++ +++s+++++ cra_locus_8963_iso_2_len_1532_ver_3 174 SWTKEEEKKFQDTVKSNPSSlekyFWDELVKAFP-GKSRRSLVSYYFNV 221 6*****************99**************.***********996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51156 | 8.727 | 72 | 125 | IPR000949 | ELM2 domain |
SMART | SM01189 | 3.9E-4 | 74 | 126 | IPR000949 | ELM2 domain |
CDD | cd00167 | 7.69E-4 | 174 | 222 | No hit | No description |
SuperFamily | SSF46689 | 9.36E-5 | 174 | 221 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016575 | Biological Process | histone deacetylation | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0000118 | Cellular Component | histone deacetylase complex | ||||
GO:0048555 | Cellular Component | generative cell nucleus | ||||
GO:0048556 | Cellular Component | microsporocyte nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MHPFMYDDHV RTSPEKLRFS QRLISAKDTL KKTGGQISSM SSSSGTDEDS VDPQSDSIVD 60 PLPDYLVNRR KKRMSLGPQH QADVPEWTGE AYESDNKWLG TKMWPLEKAE QSRNLIERER 120 VGRGRQDSCG CQFPGSNECV RFHISEKRMR LRLELGPAFY RWDFNDMGEE VACSWTKEEE 180 KKFQDTVKSN PSSLEKYFWD ELVKAFPGKS RRSLVSYYFN VFLLRQRGQQ NRTTPVEINS 240 DEEDAAGFEA EAAPNPGSIF CSPKKANPSS KQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108380.1 | 1e-111 | AT-rich interactive domain-containing protein 1-like isoform X1 | ||||
Refseq | XP_027108381.1 | 1e-111 | AT-rich interactive domain-containing protein 1-like isoform X1 | ||||
Refseq | XP_027108382.1 | 1e-112 | AT-rich interactive domain-containing protein 1-like isoform X2 | ||||
Refseq | XP_027115228.1 | 1e-111 | AT-rich interactive domain-containing protein 1-like | ||||
Refseq | XP_027115229.1 | 1e-111 | AT-rich interactive domain-containing protein 1-like | ||||
Refseq | XP_027158877.1 | 1e-111 | AT-rich interactive domain-containing protein 1 | ||||
Refseq | XP_027158878.1 | 1e-111 | AT-rich interactive domain-containing protein 1 | ||||
TrEMBL | A0A068UK10 | 1e-110 | A0A068UK10_COFCA; Uncharacterized protein | ||||
STRING | Migut.B01773.1.p | 9e-97 | (Erythranthe guttata) |