 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_8916_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 143aa MW: 16435.7 Da PI: 10.272 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_8916_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60 | 3.9e-19 | 44 | 96 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++f ++q++ Le+ Fe + p + +++LA+klgL+ rqV +WFqN+Ra+ k
cra_locus_8916_iso_1_len_1705_ver_3 44 KRRFDDTQVRSLETIFETEARPELRVKQQLANKLGLQPRQVAIWFQNKRARSK 96
568************************************************99 PP
|
| 2 | HD-ZIP_I/II | 110.6 | 1.1e-35 | 44 | 132 | 3 | 91 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee 76
krr+ + qv++LE+ Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kq+E++y++Lk++yd+l+++
cra_locus_8916_iso_1_len_1705_ver_3 44 KRRFDDTQVRSLETIFETEARPELRVKQQLANKLGLQPRQVAIWFQNKRARSKSKQIEREYNVLKASYDSLASK 117
9************************************************************************* PP
HD-ZIP_I/II 77 nerLekeveeLreel 91
e+L+ke+e+L ++
cra_locus_8916_iso_1_len_1705_ver_3 118 YESLKKENESLLIQV 132
**********98776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 143 aa
Download sequence Send
to blast |
MFERSSAAAS APKASAWTVQ FPLNEMEVGL QSISATAYGK HGSKRRFDDT QVRSLETIFE 60
TEARPELRVK QQLANKLGLQ PRQVAIWFQN KRARSKSKQI EREYNVLKAS YDSLASKYES 120
LKKENESLLI QVNIVFYNTF KEI
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
