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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_88729_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 96aa MW: 10086 Da PI: 8.3748 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 71.1 | 1.7e-22 | 2 | 41 | 18 | 58 |
ZF-HD_dimer 18 GghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 GghavDGCgEf+p+ g+egt ++lkCaAC+CHRnFHR+e++ cra_locus_88729_iso_1_len_286_ver_3 2 GGHAVDGCGEFLPA-GAEGTLDSLKCAACNCHRNFHRKETN 41 9************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 19.581 | 1 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.3E-21 | 2 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-14 | 2 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-21 | 2 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
XGGHAVDGCG EFLPAGAEGT LDSLKCAACN CHRNFHRKET NGGHFHQPLL THHPHGAHFS 60 PFYRPPPPSG YLQIASHNPR PAPLALPSTS GGGGSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010272957.1 | 8e-31 | PREDICTED: zinc-finger homeodomain protein 1-like | ||||
Refseq | XP_020420676.1 | 1e-30 | zinc-finger homeodomain protein 1 | ||||
Swissprot | A2Z259 | 2e-20 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 2e-20 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1U8B1B9 | 2e-29 | A0A1U8B1B9_NELNU; zinc-finger homeodomain protein 1-like | ||||
TrEMBL | A0A251NUJ3 | 3e-29 | A0A251NUJ3_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5W0K3 | 2e-29 | M5W0K3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06891 | 4e-30 | (Prunus persica) | ||||
STRING | XP_010272957.1 | 3e-30 | (Nelumbo nucifera) |
Publications ? help Back to Top | |||
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