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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_88601_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 87aa MW: 9574.69 Da PI: 9.3001 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H++ H cra_locus_88601_iso_1_len_445_ver_3 34 YECNFCKKGFSNAQALGGHMNIH 56 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-7 | 22 | 60 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.21E-8 | 32 | 61 | No hit | No description |
PROSITE profile | PS50157 | 11.801 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0063 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-6 | 34 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051973 | Biological Process | positive regulation of telomerase activity | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MENNNDQQPA AASSEQVSSP DQSQQQTHVV IRSYECNFCK KGFSNAQALG GHMNIHRKDK 60 AKLKQASKET KKSIKADITS TMPPLDA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132037.1 | 1e-24 | hypothetical protein PHAVU_011G061500g | ||||
TrEMBL | V7AIU7 | 3e-23 | V7AIU7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132037.1 | 6e-24 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2136 | 21 | 52 |