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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8794_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | BES1 | ||||||||
Protein Properties | Length: 691aa MW: 78939.1 Da PI: 6.3522 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 158 | 6.5e-49 | 86 | 228 | 2 | 134 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 ++ rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr++ cra_locus_8794_iso_5_len_2294_ver_3 86 SKSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQSLPV 159 678*******************************************************************9877 PP DUF822 76 l..eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.......a 134 + ++++ g+ s+es+l+ sslk++++++ v+ + ++++ ++++sp+slds+ +a+ + cra_locus_8794_iso_5_len_2294_ver_3 160 NhvNNSHNLGQCPVSSVESPLSvSSLKNCSVKTSVDCQPSVLRIDESLSPASLDSVIAAERdikvdkyT 228 77799999**************9********************************98876655554443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.8E-49 | 86 | 233 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 1.44E-158 | 257 | 689 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.7E-171 | 260 | 689 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 5.7E-84 | 283 | 653 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 297 | 311 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 318 | 336 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 340 | 361 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 433 | 455 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 506 | 525 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 540 | 556 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 557 | 568 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 575 | 598 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-58 | 613 | 635 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
XLFEEQAKLA KXKEEYAAEM NNTTSTTTAR NHPHHQDLDP HDPNLTPTPY PQPHPQQSQT 60 RRPRGFAATM ATTTTSSSTS PANTNSKSRK EREKEKERTK LRERHRRAIT SRMLAGLRQY 120 GNFPLPARAD MNDVLAALAR EAGWVVEADG TTYRQSLPVN HVNNSHNLGQ CPVSSVESPL 180 SVSSLKNCSV KTSVDCQPSV LRIDESLSPA SLDSVIAAER DIKVDKYTSI SPIRSPECLQ 240 ADQLIREVQT AEHGNDFSGT QYVPVYVMLA TGLVDSFCKL LNPEGVRQEL RHLKSLHVDG 300 VVVDCWWGIV EGWTPQKYEW SGYRELFNII REFEMKLQVV IAFHEYGGND SGGVFISLPQ 360 WVLEIGKENQ DIFFTDREGR RNTECLSWSI DKERVLRGRT GIEVYFDFMR SFRTEFDDFF 420 REGLISAVEI GLGPFGELKY PSFSERMGWR YPGIGEFQCY DRYSLQNLRK AATSRGHSFW 480 ARTPDNAGYY TSRPHETGFF CERGDYDSYY GRFFLRWYSQ VLIDHADNVL SLASLAFEEI 540 QLVVKIPAVY WWYKTTSHAA ELTSGYYNPT NQDGYSQIFE VLKRHLVVMK FVCPGMQLPC 600 HEIDDASADP EALSWQVLNS AWDKGLAVAG QNAVPSYERE GLMRLVDVSK PRNDPDRHQF 660 SFFVFQQPSD LVQRSMCFSE LDYFIKQMHG I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-126 | 261 | 690 | 10 | 443 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270680.1 | 0.0 | PREDICTED: beta-amylase 8 isoform X1 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A0K0PUA9 | 0.0 | A0A0K0PUA9_CAMSI; Beta-amylase | ||||
STRING | Solyc08g005780.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1607 | 24 | 48 |
Publications ? help Back to Top | |||
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